View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_high_28 (Length: 273)
Name: NF20183_high_28
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 6141094 - 6140853
Alignment:
| Q |
18 |
aattattactgaaaacaataccaagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttcccta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6141094 |
aattattactgaaaacaataccaagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttcccta |
6140995 |
T |
|
| Q |
118 |
ttatgataatgtatgcttcttggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6140994 |
ttatgataatgtatgcttcttggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcag |
6140895 |
T |
|
| Q |
218 |
aaaattacagcatctgatgttcatggacttcacacattcatc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
6140894 |
aaaattacagcatctgatgttcatggacttcacacattcatc |
6140853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 6179151 - 6178910
Alignment:
| Q |
18 |
aattattactgaaaacaataccaagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttcccta |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
6179151 |
aattattactgaaaacaataccaagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttgccca |
6179052 |
T |
|
| Q |
118 |
ttatgataatgtatgcttcttggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcag |
217 |
Q |
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| T |
6179051 |
ttatgacaatgtatgcttcttggaaaaggtaagcgaagactcagaaaagttgggaccaatatatgttcgtaatcagcttcttcgtgagctactgaagcga |
6178952 |
T |
|
| Q |
218 |
aaaattacagcatctgatgttcatggacttcacacattcatc |
259 |
Q |
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| T |
6178951 |
gaaattacagcgtctgatgttcatggacttcacacgttcatc |
6178910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 6187941 - 6187700
Alignment:
| Q |
18 |
aattattactgaaaacaataccaagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttcccta |
117 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | |
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| T |
6187941 |
aattattattgaaaacaataccaagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgttttccaagaactttgccca |
6187842 |
T |
|
| Q |
118 |
ttatgataatgtatgcttcttggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcag |
217 |
Q |
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|||||| ||||||||||||||||||||||||| ||||| || |||||||| |||| |||||||||| ||||| |||||||| ||||||||||||||| |
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| T |
6187841 |
ttatgacaatgtatgcttcttggaaaagataagcgaagactcggaaaagtttggaccaatatatgtttgtaatcagcttcttcgtgagctactgaagcga |
6187742 |
T |
|
| Q |
218 |
aaaattacagcatctgatgttcatggacttcacacattcatc |
259 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||||||| |
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| T |
6187741 |
gaaattacagcgtctgatgttcacggacttcacacattcatc |
6187700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 244
Target Start/End: Complemental strand, 6046540 - 6046335
Alignment:
| Q |
39 |
caagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgcttctt |
138 |
Q |
| |
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||||| ||||||||||||||||| |||||||||| |||||||||||||| | |||||||||||| ||| ||||| | | ||||| | | ||||| | |
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| T |
6046540 |
caagaattggaatttggggcatgggtggaatagggaagacaaccatagccagacagatgtttgcaaagcactttgcacaatatgaaagcgcttgctttat |
6046441 |
T |
|
| Q |
139 |
ggaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctactgaagcagaaaattacagcatctgatgtt |
238 |
Q |
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|||||| ||| ||||||| ||||||||| |||| || || | ||||||||||||||||||||||| || |||| ||||||| ||||| ||| || |
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| T |
6046440 |
ggaaaatgtaagtgaagaaatagaaaagtttggaccaaggtacatccgtaataagcttcttagtgagctgcttaagcgacaaattactgcatcggatatt |
6046341 |
T |
|
| Q |
239 |
catgga |
244 |
Q |
| |
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| |||| |
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| T |
6046340 |
cttgga |
6046335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 6062782 - 6062710
Alignment:
| Q |
40 |
aagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaacttt |
112 |
Q |
| |
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|||| ||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||||| ||||| |
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| T |
6062782 |
aagaattggaatttggggcatgggaggaataggaaagacaaccatagccagacagatgtttgccaagcacttt |
6062710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 6087960 - 6087790
Alignment:
| Q |
40 |
aagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttccctattatgataatgtatgcttcttg |
139 |
Q |
| |
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|||| ||||||| ||||||||| | ||||| ||||||||||||||||| | ||| |||||||||||| ||||| | | ||||| | | ||||| ||| |
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| T |
6087960 |
aagaattggaatatggggcatgggaggaatcggaaagacaaccatagccagacaaatgtttgccaagcactttgcagaatatgacagcgcttgctttttg |
6087861 |
T |
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| Q |
140 |
gaaaagataaatgaagaatcagaaaagttcggacaaatatatgttcgtaataagcttcttagtgagctact |
210 |
Q |
| |
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||||| ||| |||||| || ||| |||||| |||| ||||||||||||| |||||| |||||||||| |
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| T |
6087860 |
gaaaatgtaagtgaagatgtagtaaaactcggactaatacatgttcgtaataaccttcttggtgagctact |
6087790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 6123760 - 6123822
Alignment:
| Q |
38 |
ccaagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgttt |
100 |
Q |
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|||||| ||||||||||||| ||| |||| ||||||| ||||||||||||| ||| |||||| |
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| T |
6123760 |
ccaagaattggaatttggggtatggatggattaggaaaaacaaccatagcaagacaaatgttt |
6123822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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