View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20183_high_34 (Length: 259)
Name: NF20183_high_34
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_high_34 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 306445 - 306676
Alignment:
| Q |
18 |
gaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactcatttcttcatgacgaagtct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
306445 |
gaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactcatttcttcatgacgaagtct |
306544 |
T |
|
| Q |
118 |
ttggcgttttggctcagattgttcttgttcttgttcttgagatgaaacattgaggttggatgcttcaattggaaaggaactacttgcagcatttgtat-c |
216 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| | |
|
|
| T |
306545 |
ttggcgttttggatgagattgttcttgttcttgttcttgaggtgaaacattgaggttggatgcttcaattggagaggaaccacttgtagcatttgtatcc |
306644 |
T |
|
| Q |
217 |
actcttttaaagaatgtgtcaatagttttcat |
248 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |
|
|
| T |
306645 |
actcttttatagaatgtgtcaatagttttcat |
306676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 2827672 - 2827441
Alignment:
| Q |
18 |
gaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactcatttcttcatgacgaagtct |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2827672 |
gaatttcatctctttgatttataggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactcatttcttcatgacgaagcct |
2827573 |
T |
|
| Q |
118 |
ttggcgttttggctcagattgttcttgttcttgttcttgagatgaaacattgaggttggatgcttcaattggaaaggaactacttgcagcatttgtat-c |
216 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| | |
|
|
| T |
2827572 |
ttggcgttttggatgagattgttcttgttcttgttcttgaggtgaaacattgaggttggatgcttcaattggagaggaaccacttgtagcatttgtatcc |
2827473 |
T |
|
| Q |
217 |
actcttttaaagaatgtgtcaatagttttcat |
248 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| |
|
|
| T |
2827472 |
actcttttatagaatgtgtcaataattttcat |
2827441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 5381221 - 5381452
Alignment:
| Q |
18 |
gaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactcatttcttcatgacgaagtct |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
5381221 |
gaatttcatctctttgatttagaggaaagtcccaaatcatcgatcgcaatcctggatctacttcaatttgagaacaactcaattcttcatgataaagtct |
5381320 |
T |
|
| Q |
118 |
ttggcgttttggctcagattgttcttgttcttgttcttgagatgaaacattgaggttggatgcttcaattggaaaggaactacttgcagcatttgtat-c |
216 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
5381321 |
ttggtgttttgactcagattgtttttgttcttgttcttgaggtgaaacatcgaggttggatgcttcaattggagaggaactacttgcagcatttgtatcc |
5381420 |
T |
|
| Q |
217 |
actcttttaaagaatgtgtcaatagttttcat |
248 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |
|
|
| T |
5381421 |
actcttttaaagaatgtgtcaatggttttcat |
5381452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 10585769 - 10585543
Alignment:
| Q |
18 |
gaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactcatttcttcatgacgaagtct |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
10585769 |
gaatttcatctctttgatttataggaaagtcccaaatcatcggttgcaattctggatctacttcaatttgagaacgactcatttcttcatgacaaagtct |
10585670 |
T |
|
| Q |
118 |
ttggcgttttggctcagattgttcttgttcttgttcttgagatgaaacattgaggttggatgcttcaattggaaaggaactacttgcagcatttgtatc- |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||| | |||| |||||||||||||||||| |||||||||||| |||||||| ||| |
|
|
| T |
10585669 |
ttggcgttttggctcagattgttcttgtt------cttgaggtgaaataatgagattggatgcttcaattggagaggaactacttggagcatttggatcg |
10585576 |
T |
|
| Q |
217 |
actc-ttttaaagaatgtgtcaatagttttcat |
248 |
Q |
| |
|
| || |||||||||| |||||||||||||||| |
|
|
| T |
10585575 |
attctttttaaagaagttgtcaatagttttcat |
10585543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 13769517 - 13769280
Alignment:
| Q |
18 |
gaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactcatttcttcatgacgaagtct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13769517 |
gaatttcatctctttgatttacaggaaagtcccagatcatcggttgcaatcctggatctacttcaatttgaaaacaactcatttcttcatgacgaagtct |
13769418 |
T |
|
| Q |
118 |
ttggcgttttggctcagattgttcttgttcttgtt------cttgagatgaaacattgaggttggatgcttcaattggaaaggaactacttgcagcattt |
211 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
13769417 |
ttggcgttttggctcagaattttcttgttcttgttcttgttcttgaggtgaaacattgaggttggatgcttcaattgaagaggaactacttgcagcattt |
13769318 |
T |
|
| Q |
212 |
gta-tcactcttttaaagaatgtgtcaatagttttcat |
248 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13769317 |
gtattcactcttttaaagaatgtgtcaatagttttcat |
13769280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 46722546 - 46722320
Alignment:
| Q |
18 |
gaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactcatttcttcatgacgaagtct |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
46722546 |
gaatttcatctctttgatttataggaaagtcccaaatcatcggttgcaattctggatctacttcaatttgagaacgactcatttcttcatgacaaagtct |
46722447 |
T |
|
| Q |
118 |
ttggcgttttggctcagattgttcttgttcttgttcttgagatgaaacattgaggttggatgcttcaattggaaaggaactacttgcagcatttgtatc- |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| ||||| | |||| |||||||||||||||| | |||||||||||| |||||||| ||| |
|
|
| T |
46722446 |
ttggtgttttggctcagattgttcttgtt------cttgaggtgaaataatgagattggatgcttcaattgaagaggaactacttggagcatttggatcg |
46722353 |
T |
|
| Q |
217 |
actc-ttttaaagaatgtgtcaatagttttcat |
248 |
Q |
| |
|
| || |||||||||| |||||||||||||||| |
|
|
| T |
46722352 |
attctttttaaagaagttgtcaatagttttcat |
46722320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 39684773 - 39685002
Alignment:
| Q |
18 |
gaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactca----tttcttcatgacgaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39684773 |
gaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactcatttctttcttcatgacgaa |
39684872 |
T |
|
| Q |
114 |
gtctttggcgttttggctcagattgttcttgttcttgttcttgagatgaaacattgaggttggatgcttcaattggaaaggaactacttgcagcatttgt |
213 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
39684873 |
gtctttggtgttttggctcaga------ttgttcttgttcttgaggtgaaacattgaggttggatgctttaattggagaggaactacttgcagcatttgt |
39684966 |
T |
|
| Q |
214 |
at-cactcttttaaagaatgtgtcaatagttttcat |
248 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39684967 |
atccactcttttaaagaatgtgtcaatagttttcat |
39685002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 30343332 - 30343106
Alignment:
| Q |
18 |
gaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactcatttcttcatgacgaagtct |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
30343332 |
gaatttcatctctttgatttataggaaagtcccaaatcatcggttgcaattctggatctacttcaatttgagaacgactcatttcttcatgacaaagtct |
30343233 |
T |
|
| Q |
118 |
ttggcgttttggctcagattgttcttgttcttgttcttgagatgaaacattgaggttggatgcttcaattggaaaggaactacttgcagcatttgtatc- |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| ||||| | |||| |||||||||||||||| | |||||||||||| |||||||| ||| |
|
|
| T |
30343232 |
ttggagttttggctcagattgttcttgtt------cttgaggtgaaataatgagattggatgcttcaattgaagaggaactacttggagcatttggatcg |
30343139 |
T |
|
| Q |
217 |
actc-ttttaaagaatgtgtcaatagttttcat |
248 |
Q |
| |
|
| || |||||||||| |||||||||||||||| |
|
|
| T |
30343138 |
attctttttaaagaagttgtcaatagttttcat |
30343106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 48777375 - 48777159
Alignment:
| Q |
18 |
gaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactcatttcttcatgacgaagtct |
117 |
Q |
| |
|
|||||| |||||||||||| | |||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48777375 |
gaattttatctctttgattgataggaaagtcctaaatcataggtcgcaatcttggatctacttcaatttgagaacaactcatttcttcatgacgaagtct |
48777276 |
T |
|
| Q |
118 |
ttggcgttttggctcagattgttcttgttcttgttcttgagatgaaacattgaggttggatgcttcaattggaaaggaactacttgcagcatttgtatc- |
216 |
Q |
| |
|
||||||||||||| | |||||||||||||| || ||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
48777275 |
ttggcgttttggc---------tattgttcttgttctttaggtgaaatattgagattggatgcttcaattggagaggaactacttgcagcatttgtaaca |
48777185 |
T |
|
| Q |
217 |
actcttttaaagaatgtgtcaatagt |
242 |
Q |
| |
|
| |||||||||||| |||||||||| |
|
|
| T |
48777184 |
attcttttaaagaagttgtcaatagt |
48777159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 2812252 - 2812033
Alignment:
| Q |
18 |
gaatttcatctctttgatttacaggaaagtcccaaatcatcggtcgcaatcctggatctacttcaatttgagaacaactcatttcttcatgacgaagtct |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||| ||| ||||||||||| ||| |||||||||||| ||||||| |
|
|
| T |
2812252 |
gaatttcatctctttgatttacaagaaagtcccaa-tcaacaatcgcaatcctggatctgcttaaatttgagaacgactaatttcttcatgatgaagtct |
2812154 |
T |
|
| Q |
118 |
ttggcgttttggctcagattgttcttgttcttgttcttgagatgaaacattgaggttggatgcttcaattggaaaggaactacttgcagcatttgtatca |
217 |
Q |
| |
|
||| |||||||||||||||||| |||| || ||||| ||| | |||||| | | |||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
2812153 |
ttgtcgttttggctcagattgt------tcttttttttgaggtgatatattgagatcgaatgcttcaattggagaggaactgcttgcagcatttgtatcg |
2812060 |
T |
|
| Q |
218 |
ctcttttaaagaatgtgtcaatagttt |
244 |
Q |
| |
|
| ||||||||| |||||||||||| |
|
|
| T |
2812059 |
attctttaaagaagttgtcaatagttt |
2812033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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