View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_high_35 (Length: 253)
Name: NF20183_high_35
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_high_35 |
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| [»] scaffold0417 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 8229592 - 8229442
Alignment:
| Q |
16 |
aatatggtctgctggctgctcatgctgagtaacgggtacctcaatgctttctgcctgtctgtctccaacctcaattccatggtttgcgtgcacctcctgc |
115 |
Q |
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| T |
8229592 |
aatatggtctgctggctgctcatgctgagtaatgggtacctcaacgctctctgcctgtctgtctccaacctcaattccatggtttgcgtgcacctcctgc |
8229493 |
T |
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| Q |
116 |
tggtggggaggagaagcagcttgtatcaaagcatcaaaagctttagaggag |
166 |
Q |
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| T |
8229492 |
tggtggggaggagaagcagcttgtatcgaagcatcaaaagctttagaggag |
8229442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 8226152 - 8226063
Alignment:
| Q |
164 |
gagcctatgtcagaaggattatccttctttccatcctagcatggattgtttctacgaatgttcagttttttccccttatcaacgggaaga |
253 |
Q |
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| T |
8226152 |
gagcctatgtcagaaggattatccttctttccatcctagcatggattgtttctacgaatgttcagttttttccccttatcaacgggaaga |
8226063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 19975415 - 19975645
Alignment:
| Q |
16 |
aatatggtctgctggctgctcatgctgagtaacgggtacctcaatgctttctgcctgtctgtctccaacctcaattccatggtttgcgtgcacctcctgc |
115 |
Q |
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| T |
19975415 |
aatatggtctgatgactgctaatgctgagtaacaggtagcttaacgctatatgtgtgtatgtttgcaaccttagctccatggtctgcgtgcacctcctgc |
19975514 |
T |
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| Q |
116 |
tgg--tggggaggagaagcagcttgtatcaaagcatcaaaagctttagaggagcctatgtcagaaggattatcctt--ctttccatcctagcatggattg |
211 |
Q |
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| T |
19975515 |
tgacatggggagaaagagcggctcgtatcgaagcctcaaaatctttagaggagccaatgccagagggattatcctttgctttccatccttgcgtggactg |
19975614 |
T |
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| Q |
212 |
tttctacgaatgttcagttttttccccttat |
242 |
Q |
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| T |
19975615 |
ctactgtgaaagttcagttttttccctttat |
19975645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 21017418 - 21017188
Alignment:
| Q |
16 |
aatatggtctgctggctgctcatgctgagtaacgggtacctcaatgctttctgcctgtctgtctccaacctcaattccatggtttgcgtgcacctcctgc |
115 |
Q |
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| T |
21017418 |
aatatggtctgatgactgctaatgctgagtaacaggtagcttaacgctatatgtgtgtatgtttgcaaccttagctccatggtctgcgtgcacctcctgc |
21017319 |
T |
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| Q |
116 |
tgg--tggggaggagaagcagcttgtatcaaagcatcaaaagctttagaggagcctatgtcagaaggattatcctt--ctttccatcctagcatggattg |
211 |
Q |
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| T |
21017318 |
tgacatggggagaaagagcggctcgtatcgaagcctcaaaatctttagaggagccaatgccagagggattatcctttgctttccatccttgcgtggactg |
21017219 |
T |
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| Q |
212 |
tttctacgaatgttcagttttttccccttat |
242 |
Q |
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| T |
21017218 |
ctactgtgaaagttcagttttttccctttat |
21017188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 27860229 - 27860352
Alignment:
| Q |
81 |
caacctcaattccatggtttgcgtgcacctcctgc---tggtggggaggagaagcagcttgtatcaaagcatcaaaagctttagaggagcctatgtcaga |
177 |
Q |
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| T |
27860229 |
caacctcagttccatggtctgcgtgcacctcctgctgatgatggggagaaggagcagcttgtattgaagcctcaaaggctgtagaggagcctatgctgga |
27860328 |
T |
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| Q |
178 |
aggattatcctt--ctttccatcc |
199 |
Q |
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| T |
27860329 |
gggattatcctttactttccatcc |
27860352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 19974915 - 19975068
Alignment:
| Q |
16 |
aatatggtctgctggctgctcatgctgagtaacgggtacctcaatgctttctgcctgtctgtctccaacctcaattccatggtttgcgtgcacctcctgc |
115 |
Q |
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| T |
19974915 |
aatatggtctattggctgctaatgctgagtaaccggtagcttaacgctatctatgtgtctgtttgctaactcaactccatggtctgcgtgcacctcctgc |
19975014 |
T |
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| Q |
116 |
tg-gtggggaggagaagcagcttgtatcaaagcatcaaaagctttagaggagcc |
168 |
Q |
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| T |
19975015 |
tgtcaggggtgaagcagtggcttgtgtcaaagcctcaaaagctttagatgagcc |
19975068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 21017918 - 21017765
Alignment:
| Q |
16 |
aatatggtctgctggctgctcatgctgagtaacgggtacctcaatgctttctgcctgtctgtctccaacctcaattccatggtttgcgtgcacctcctgc |
115 |
Q |
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|||||||||| |||||||| |||||||||||| |||| || || ||| ||| ||||||| | | | ||||| |||||||| |||||||||||||||| |
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| T |
21017918 |
aatatggtctattggctgctaatgctgagtaaccggtagcttaacgctatctatgtgtctgtttgctaactcaactccatggtctgcgtgcacctcctgc |
21017819 |
T |
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| Q |
116 |
tg-gtggggaggagaagcagcttgtatcaaagcatcaaaagctttagaggagcc |
168 |
Q |
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| T |
21017818 |
tgtcaggggtgaagcagtggcttgtgtcaaagcctcaaaagctttagatgagcc |
21017765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 4902 - 4849
Alignment:
| Q |
149 |
tcaaaagctttagaggagcctatgtcagaaggattatcc--ttctttccatcct |
200 |
Q |
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| T |
4902 |
tcaaaagctttagaggagcctatgtcggagggattatccttttctttccatcct |
4849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 5005 - 4916
Alignment:
| Q |
28 |
tggctgctcatgctgagtaacgggtacctcaatgctttctgcctgtctgtctccaacctcaattccatggtttgcgtgcacctcctgctg |
117 |
Q |
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| T |
5005 |
tggctgctcatgttgagtaacaggtgcctcagcaatctctgtctgtctgtctgcgaactcagttccatggtctgtgtgcacctcctgctg |
4916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 38232952 - 38232864
Alignment:
| Q |
102 |
cgtgcacctcctgctggtggggaggagaagcagcttgtatcaaagcatcaaaagctttagaggagcctatgtcagaaggattatccttc |
190 |
Q |
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| T |
38232952 |
cgtgcacctccttttgatgaggaggaggaacaacatgtgtcagagcctcaaaagctttggaggagccaatgtcggaaggattatccttc |
38232864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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