View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_high_37 (Length: 251)
Name: NF20183_high_37
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 87 - 242
Target Start/End: Original strand, 10248433 - 10248588
Alignment:
| Q |
87 |
agagattggttgttttgtgattaccatagcaagccaagaatctgcatcaacctgccatggaagtatatgggaaagtgtatgccacaaccagtaaaaggaa |
186 |
Q |
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| T |
10248433 |
agagattggttgttttgtgattaccatagcaagccaagaatctgcatcaacctgccatggaagtatatgggaaagtgtatgccacaaccagtaaaaggaa |
10248532 |
T |
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| Q |
187 |
ttatgcatatatcagaattgacactgcttgtttctgaatgtgcatatcagaattat |
242 |
Q |
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| T |
10248533 |
ttatgcatatatcagaattgacactgcttgtttctgaatgtgcatataagaattat |
10248588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 10244553 - 10244625
Alignment:
| Q |
17 |
gttctaacgcatgcaaaattgatggttgaatttggccaatcaattgatatagccatgtcttgaaataaataga |
89 |
Q |
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| T |
10244553 |
gttctaacgcatgcaaaattgatggctgaatttggccaatcaattgatatagccatgtcttgaaataaataga |
10244625 |
T |
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