View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_high_6 (Length: 574)
Name: NF20183_high_6
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 23 - 353
Target Start/End: Complemental strand, 52396380 - 52396050
Alignment:
| Q |
23 |
acgcttcatcttcactcaggtttccaaaaccaatggaagggctacatgaggttggtccaccaccgtttctcaagaaaacttttgaaatggtggatgatcc |
122 |
Q |
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| T |
52396380 |
acgcttcatcttcactcaggtttccaaaaccaatggaagggctacatgaggttggtccaccaccgtttctcaagaagacttttgaaatggtggaggatct |
52396281 |
T |
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| Q |
123 |
ggaaactgacccgattgtttcatggagtgcttctcgtgatagttttgttgtttgggattctcatgaattctccaaaattcttcttcctaagtactttaag |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52396280 |
ggaaactgacccgattgtttcatggagtgcttctcgtgatagttttgttgtttgggattctcatgaattctccaaaattcttcttcctaagtactttaag |
52396181 |
T |
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| Q |
223 |
cataataatttttctagcttcattcgccagctcaacacctatgtaagtcnnnnnnnttctcacaatcctattaataatcgtaattctctgtatcttcata |
322 |
Q |
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| T |
52396180 |
cataataatttttctagcttcattcgccagctcaacacctatgtaagtcaaaaaaattctcacaatcctattaataatcgtaattctctgtatcttcata |
52396081 |
T |
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| Q |
323 |
tgttatcattgcatacatatttataatcttg |
353 |
Q |
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| T |
52396080 |
tgttatcattgcatacatatttataatcttg |
52396050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 430 - 558
Target Start/End: Complemental strand, 52396031 - 52395903
Alignment:
| Q |
430 |
aaaattaattttgttaaaaagttgatttaacataaaatgattcatatttatagggagctatgaatgtttggttcctcttttacagatgttgaattgattt |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52396031 |
aaaattaattttgttaaaaagttgatttaacataaaatgatccatatttatagggagctatgaatgtctggttcctcttttacagatgttgaattgattt |
52395932 |
T |
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| Q |
530 |
ttgacatgtttgttgttctcgattagaat |
558 |
Q |
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| T |
52395931 |
ttgacatgtttgttgttctcgattagaat |
52395903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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