View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20183_high_7 (Length: 531)
Name: NF20183_high_7
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 10929604 - 10929088
Alignment:
| Q |
1 |
gtagaagtattgctggatttgggtatcttgccatttctaattacatccaccactacttgttgaaaaccatgggaccacttgtacgactcggcaattgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10929604 |
gtagaagtattgctggatttgggtatcttgccatttctaattacatccaccactgcttgttgaaaaccatgggaccacttgtatgactcggcaattgaac |
10929505 |
T |
|
| Q |
101 |
ttgcagattgacccgcactgttcaccaagccaaaatcagcaccagcccttgttagtactttgagacactcctcttgtttatattttgcacaaaccatcaa |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10929504 |
ttgcagattgacctgcactgttcaccaagcaaaaatcagcaccagcccttgttagtactttgagacactcctcttgtttatattttgcacaaatcatcaa |
10929405 |
T |
|
| Q |
201 |
agctgtgtcaccggagtctgttcgagagttcaaatcacaaccaaaatcaattaggcattgagttattgcaggtaagcctagacgagacgccatgtgtaca |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10929404 |
agctgtgtcaccgcagtctgttcgagagttcaaatcacaaccgaaatcaatcaggcattgagttattgcaggtaagcctagacgagatgccatgtgtaca |
10929305 |
T |
|
| Q |
301 |
ggaaggaactcggtcttgctggttgttttgactaaggattccacattagcaccacattctaagagtatcctaacagcctcgacattgccacaaaggatag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10929304 |
ggaaggaactcggtcttgctggttgttttgactaaggattccacattagcaccacattctaagagtatcctaacagcctcgacattgccacaaaggatag |
10929205 |
T |
|
| Q |
401 |
catggtgtagaatagttcttccacagtgacaactatttgagacatattgcaggagcaagcgtaatatagcaccacttttttcaaaatactcaactgcaca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10929204 |
catggtgtagaatagttcttccacagtgacaattatttgagacatgttgcaggagcaagcgtaatatagcaccacttttttcaaaatactcaactgcaca |
10929105 |
T |
|
| Q |
501 |
ccaggtgatgccatatg |
517 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10929104 |
ccaggtgatgccatatg |
10929088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University