View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_high_8 (Length: 497)
Name: NF20183_high_8
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 269 - 483
Target Start/End: Original strand, 14680005 - 14680219
Alignment:
| Q |
269 |
aatgattatttctagattagagaagcatgtggattcatattcaagcaatcaattcactaattaaacagtgaattgacaggacaacaccatagatttggtt |
368 |
Q |
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| T |
14680005 |
aatgattatttctagattagagaagcatggggattcatattcaagcaatcaattcactaattaaacagtgaattgacaggacaacaccatagatttggtt |
14680104 |
T |
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| Q |
369 |
taacaagaaaagtagagaaaacaatagaataatttttgagtttatattttaaatggaacaagaatacaaaggtggttacnnnnnnnggtaacacatacat |
468 |
Q |
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| T |
14680105 |
taacaagaaaagtagagaaaacaacagaatgatttttgagtttatattttaaatggaacaagaatacaaaggtggttactttttttggtaacacatacat |
14680204 |
T |
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| Q |
469 |
ggtaacttaatgata |
483 |
Q |
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||||||||||||||| |
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| T |
14680205 |
ggtaacttaatgata |
14680219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 14690774 - 14690931
Alignment:
| Q |
18 |
tgttgaagatgttttagtgagtagagacaacaaactcaaagcagagattcaacatcttcaagagaagtttgatatggagagacaagctaggttacaagcc |
117 |
Q |
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| T |
14690774 |
tgttgaagaaattttagttagcagagacaagaaactcaaaacagagattcaaaatctttaagagaagtttgatatggagagacaagctaggttacaagct |
14690873 |
T |
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| Q |
118 |
gaggaagatttgaagaagagtgaggaactgtgtgagagaggtaaaatggcacaaaata |
175 |
Q |
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| T |
14690874 |
gaggaagatttgaagaagagtgaggaactgtgtgagagagctaaaatggcacagaata |
14690931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 41686620 - 41686474
Alignment:
| Q |
29 |
ttttagtgagtagagacaacaaactcaaagcagagattcaacatcttcaagagaagtttgatatggagagacaagctaggttacaagccgaggaagattt |
128 |
Q |
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| T |
41686620 |
ttttaatgagtagatacaagaaactgcaagctgaaattctacatcttcaagagaagtttgaattggagagactaacgaggtttcaagctgaggaagattt |
41686521 |
T |
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| Q |
129 |
gaagaagagtgaggaactgtgtgagagaggtaaaatggcacaaaata |
175 |
Q |
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| T |
41686520 |
gagaaaaagagaggaactttgtgaaagagggataagagcacaaaata |
41686474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 41708956 - 41708852
Alignment:
| Q |
71 |
atcttcaagagaagtttgatatggagagacaagctaggttacaagccgaggaagatttgaagaagagtgaggaactgtgtgagagaggtaaaatggcaca |
170 |
Q |
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| T |
41708956 |
atcttcaagagaaggttgaaatggagaaaaaaacgaggtttcaagccgaggaagatttgagaaaaagagaggaactgtgtgaaaaagggaaaagagcaca |
41708857 |
T |
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| Q |
171 |
aaata |
175 |
Q |
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||||| |
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| T |
41708856 |
aaata |
41708852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 41718028 - 41717924
Alignment:
| Q |
71 |
atcttcaagagaagtttgatatggagagacaagctaggttacaagccgaggaagatttgaagaagagtgaggaactgtgtgagagaggtaaaatggcaca |
170 |
Q |
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|||||||||||||| |||| ||||||| | || | ||||| ||||||||||||||||||| || || |||||||||||||| | ||| |||| ||||| |
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| T |
41718028 |
atcttcaagagaaggttgaaatggagaaaaaaacaaggtttcaagccgaggaagatttgagaaaaagagaggaactgtgtgaaaaagggaaaagagcaca |
41717929 |
T |
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| Q |
171 |
aaata |
175 |
Q |
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||||| |
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| T |
41717928 |
aaata |
41717924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 41687700 - 41687846
Alignment:
| Q |
17 |
atgttgaagatgttttagtgagtagagacaacaaactcaaagcagagattcaacatcttcaagagaagtttgatatggagagacaagctaggttacaagc |
116 |
Q |
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|||||||||| |||||||||| |||||| || ||||| || | | |||| ||||||||||||||||||||| ||||| | || | | ||||| |||| |
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| T |
41687700 |
atgttgaagaggttttagtgactagagataagaaactgcaaacgaaaattctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagt |
41687799 |
T |
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| Q |
117 |
cgaggaagatttgaagaagagtgaggaactgtgtgagagaggtaaaa |
163 |
Q |
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| T |
41687800 |
tgaggaagatgtgaggaaaagagaggaactatgtgaaagagggaaaa |
41687846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 14682350 - 14682419
Alignment:
| Q |
18 |
tgttgaagatgttttagtgagtagagacaacaaactcaaagcagagattcaacatcttcaagagaagttt |
87 |
Q |
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| T |
14682350 |
tgttgaagaaattttagtgagtagatatgagaaactccgagcagagaatcaacatcttcaacagaagttt |
14682419 |
T |
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