View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_high_9 (Length: 486)
Name: NF20183_high_9
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 50750980 - 50750510
Alignment:
| Q |
1 |
taccaaaagatgaccccagcaattttatttataataagctaatagaacctacatacataaattaataatggcaattttcattgaaaatgacacaataaga |
100 |
Q |
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| T |
50750980 |
taccaaaagatgaccccagcaattttatttataataagctaatagaacctacatacataaattaataatggcaattttcattgaaaatgacacaataaga |
50750881 |
T |
|
| Q |
101 |
ttcaaatcacatgaatcttaatctaaatggcttgaacagtgtgaatgaatataagtttctgagtttcctacggaatcactccatgacttggcaataataa |
200 |
Q |
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| T |
50750880 |
ttcaaatcacatgaatcttaatctaaatggcttgaacagtgtgaatgaatataagtttctgagtttcctacggaatcactccatgacttggcaataataa |
50750781 |
T |
|
| Q |
201 |
aaaatgacaccttctaacaggataagaaataatctatcatggccaccttagctcttggccttggtacgcaatttctgaataatagtgtaaaacaccagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| |
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| T |
50750780 |
aaaatgacaccttctaacaggataagaaataatctatcatggccaccttagctcttggccttggtacgcaatttttgaataatagtgt-aaacactagaa |
50750682 |
T |
|
| Q |
301 |
agtaaatgtgctatgatccgtacttgcagatattctcaaatcccatatactcatgattggcaatcttgtgcaccatatttgaaatgccaactccacctaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50750681 |
agtaaatgtgctatgatccgtacttgcagatattctcaaatcccatatactcatgattggcaatcttgtgcaccatatttgaaatgccaactccacctaa |
50750582 |
T |
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| Q |
401 |
caagatgagtgaaaatattagtgtaccatatactgatataatgtttgtgcatagtcggccacgtctagactg |
472 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
50750581 |
caagatgagtgaaaatattagtgtaccatatattgatataatgtttgtgcatagtcagccacgtctagactg |
50750510 |
T |
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