View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20183_low_10 (Length: 480)
Name: NF20183_low_10
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 104 - 464
Target Start/End: Original strand, 4349630 - 4349990
Alignment:
| Q |
104 |
ccaataataaccaagagagtatggagtatgatccgtgtggctttgttcatgttaagaaaaggcatatccaagggaaaactaacgatggacctcaacatga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
4349630 |
ccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacctcaacatga |
4349729 |
T |
|
| Q |
204 |
tggttaaacgccgcggcaagctcgccggaaaagccattaccaacctcatgtttcatcaccaccacggtggctccacctcaagccgccgtaacgacacacg |
303 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4349730 |
tggttaaacaccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccacggtggctccacctcaagccgtcgtaacgacacacg |
4349829 |
T |
|
| Q |
304 |
cctctctaccaaaagggagtatgagttcagctgtagcaacacccctaaatacaaattttcatttaacaacaaacgccaccgcaacaaccacttcttcacg |
403 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4349830 |
cctctctaccacaagggagtatgagttcagctgtagcaacacccctaaatacaaattttcatttaacaacaaacgccaccgcaacaaccacttcttcacg |
4349929 |
T |
|
| Q |
404 |
tgtgctcacgcgcctctcacacaagacgatgacattgttaccgttaatgcggttaaggctg |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4349930 |
tgtgctcacgcgcctctcacacaagacgatgacattgttaccgttaatgcggttaaggctg |
4349990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 104 - 464
Target Start/End: Complemental strand, 4359254 - 4358903
Alignment:
| Q |
104 |
ccaataataaccaagagagtatggagtatgatccgtgtggctttgttcatgttaagaaaaggcatatccaagggaaaactaacgatggacctcaacatga |
203 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
4359254 |
ccaataattactaagagagtatggagtatgatacgtgtggccttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacctcaacatga |
4359155 |
T |
|
| Q |
204 |
tggttaaacgccgcggcaagctcgccggaaaagccattaccaacctcatgtttcatcaccaccacggtggctccacctcaagccgccgtaacgacacacg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
4359154 |
tggttaaacgccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtggctccacctcaagccgccgtaatgacacacg |
4359055 |
T |
|
| Q |
304 |
cctctctaccaaaagggagtatgagttcagctgtagcaacacccctaaatacaaattttcatttaacaacaaacgccaccgcaacaaccacttcttcacg |
403 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| || || ||||||||| | | |||||||| || | | ||||||||||| |
|
|
| T |
4359054 |
cctctctaccacaagggagtatgagttcagctgcagcaacacacccaactacaaatttgccctaaacaacaagcgtc---------ataacttcttcacg |
4358964 |
T |
|
| Q |
404 |
tgtgctcacgcgcctctcacacaagacgatgacattgttaccgttaatgcggttaaggctg |
464 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||| ||||||||||||||||| |||| |
|
|
| T |
4358963 |
tgtgctcacgcgcctctcacaaaagaagacgacattgtaaccgttaatgcggttaaagctg |
4358903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 104 - 464
Target Start/End: Original strand, 4353017 - 4353367
Alignment:
| Q |
104 |
ccaataataaccaagagagtatggagtatgatccgtgtggctttgttcatgttaagaaaaggcatatccaagggaaaactaacgatggacctcaacatga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
4353017 |
ccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggtatatcaaagggaaaactaatgatggacctcaacatga |
4353116 |
T |
|
| Q |
204 |
tggttaaacgccgcggcaagctcgccggaaaagccattaccaacctcatgtttcatcaccaccacggtggctccacctcaagccgccgtaacgacacacg |
303 |
Q |
| |
|
|||| |||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
4353117 |
tggtcaaacgccgtag-aagcttgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtggctccacctcaagccgccgtaatgacacacg |
4353215 |
T |
|
| Q |
304 |
cctctctaccaaaagggagtatgagttcagctgtagcaacacccctaaatacaaattttcatttaacaacaaacgccaccgcaacaaccacttcttcacg |
403 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| || || ||||||||| | | |||||||| || | | ||||||||||| |
|
|
| T |
4353216 |
cctctctaccacaagggagtatgagttcagctgcagcaacacacccaactacaaatttgccctaaacaacaagcgtc---------ataacttcttcacg |
4353306 |
T |
|
| Q |
404 |
tgtgctcacgcgcctctcacacaagacgatgacattgttaccgttaatgcggttaaggctg |
464 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||| ||||||||||||||||| |||| |
|
|
| T |
4353307 |
tgtgctcacgcgcctctcacaaaagaagacgacattgtaaccgttaatgcggttaaagctg |
4353367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 116 - 291
Target Start/End: Complemental strand, 43475611 - 43475430
Alignment:
| Q |
116 |
aagagagtatggagtatgatccgtgtggctttgttcatgttaagaaaaggcatatccaagggaaaactaacgatggacctcaacatgatggttaaacgcc |
215 |
Q |
| |
|
|||| ||| ||||||||| | |||||||| || |||||||| |||||||| || || ||||| ||||||| ||||| ||| ||||||||| | ||||||| |
|
|
| T |
43475611 |
aagaaagtgtggagtatggtacgtgtggccttcttcatgttgagaaaaggtatgtcaaagggcaaactaatgatgggcctaaacatgatgctcaaacgcc |
43475512 |
T |
|
| Q |
216 |
gcggcaagctcgccggaaaagccattaccaacctcatgtt------tcatcaccaccacggtggctccacctcaagccgccg |
291 |
Q |
| |
|
|| ||||||||||||||||||||||| |||| || ||||| ||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
43475511 |
gcagcaagctcgccggaaaagccattgccaatctaatgttccaccatcaccacaaccacggtggctccacctcaagccgccg |
43475430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 116 - 255
Target Start/End: Complemental strand, 43486230 - 43486091
Alignment:
| Q |
116 |
aagagagtatggagtatgatccgtgtggctttgttcatgttaagaaaaggcatatccaagggaaaactaacgatggacctcaacatgatggttaaacgcc |
215 |
Q |
| |
|
|||||||| ||||||||| | ||||| || || |||||||| ||||||||||| || ||||||||||| | ||||| ||| ||||||||| | ||||||| |
|
|
| T |
43486230 |
aagagagtgtggagtatggtacgtgtagccttcttcatgttgagaaaaggcatttcaaagggaaaactgatgatgggcctaaacatgatgctcaaacgcc |
43486131 |
T |
|
| Q |
216 |
gcggcaagctcgccggaaaagccattaccaacctcatgtt |
255 |
Q |
| |
|
|| ||||||| ||||||||||||||| |||| || ||||| |
|
|
| T |
43486130 |
gcagcaagcttgccggaaaagccattgccaatctaatgtt |
43486091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University