View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_low_11 (Length: 472)
Name: NF20183_low_11
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 10 - 458
Target Start/End: Original strand, 40683805 - 40684253
Alignment:
| Q |
10 |
aagaatatctcttatggaggagcagctcaataacattttacgtggatgtgaggatggagagaaagttgctagtaggaccagtttgtccatgagtttcacc |
109 |
Q |
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| T |
40683805 |
aagaatatctcttatggaggagcagctcaataacattttacgtggatatgaggatggagagaaagttgctagtaggaccagtttgtccatgagtttcacc |
40683904 |
T |
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| Q |
110 |
catattgataggcggctccaccaaatgttgtttgctgatcgggattatgaaagttatggagtaacaacaacagacgtggaatgtcctccctctttccggc |
209 |
Q |
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| T |
40683905 |
catattgataggcggctccaccaaatgttgtttgctgatcgggattatgaaagttatggagtaacaacaacagacgtggaatgtcctccctctttccggc |
40684004 |
T |
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| Q |
210 |
caaaaattacgatagaatgttgtgaggaaaaaggatactcggtggttaatgtcagatgcaaagatcgcgcaaaactcatgtttgacattgtttgcactct |
309 |
Q |
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| T |
40684005 |
caaaaattacgatagaatgttgtgaggaaaaaggatactcggtggttaatgtcagatgcaaagatcgcgcaaaactcatgtttgacattgtttgcactct |
40684104 |
T |
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| Q |
310 |
tactgatatgcaatatgttgtttcccatgccacaatctcatcagaccgcccttatgcatcgcaggtatatcacattaacactcgtttctgcatgttcatt |
409 |
Q |
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| T |
40684105 |
tactgatatgcaatatgttgtttcccatgccacaatctcatcagaccgcccttatgcatcgcaggtatatcacattaacactcgtttctgcatgttcatt |
40684204 |
T |
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| Q |
410 |
tatcagtcacacgtagtacttaaatggttcaaatgttcggggtaaaact |
458 |
Q |
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| T |
40684205 |
tatcagtcacacgtagtacttaaatggttcaaatgttcggggtaaaact |
40684253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 123 - 377
Target Start/End: Complemental strand, 10143629 - 10143369
Alignment:
| Q |
123 |
ggctccaccaaatgttgtttgctgatcgggattatgaaagttatgg---agtaacaaca---acagacgtggaatgtcctccctctttccggccaaaaat |
216 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||| ||| | || || | ||||||||||||| |||| || || |
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| T |
10143629 |
ggctccaccaaatgttgtttgctgatagggattatgagagtgctggtggagtaacaacagcaacaaatgttgattctcctccctctttcaggcccaatat |
10143530 |
T |
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| Q |
217 |
tacgatagaatgttgtgaggaaaaaggatactcggtggttaatgtcagatgcaaagatcgcgcaaaactcatgtttgacattgtttgcactcttactgat |
316 |
Q |
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| T |
10143529 |
tgaaatagaacgtattgaagaaaaaggctactcagtggttagtgtgagatgcaaagatcgggcaaaattgatgtttgacattgtctgcactcttactgac |
10143430 |
T |
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| Q |
317 |
atgcaatatgttgtttcccatgccacaatctcatcagaccgcccttatgcatcgcaggtat |
377 |
Q |
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| T |
10143429 |
atggaatatgttgtttttcatgcctccatctcatctgatgggccttatgcttcacaggtat |
10143369 |
T |
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