View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_low_13 (Length: 443)
Name: NF20183_low_13
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 428
Target Start/End: Original strand, 14698612 - 14699031
Alignment:
| Q |
9 |
atcaaaggactcacagcaaaaccaaacacactagttatattcaaaatcaactctgttagaagctagtgcaatcaaacgagcctagagaaggatcaagagg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14698612 |
atcaaaggactcacagcaaaaccaaacacactagttatattcaaaatcaactctgttagaagctagtgcaatcaaacgagcctagagaaggatcaagagg |
14698711 |
T |
|
| Q |
109 |
agtgagaaagaaaaagggtaacccacctcagaagaaaaaccattttgagatgcacgtgaagcgttgatcaaaccgtgaaacattacagtgatgccatctt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14698712 |
agtgagaaagaaaaagggtaacccacctcagaagaaaaaccattttgagatgtacgtgaagcgttgatcaaaccgtgaaacattacagtgatgccatctt |
14698811 |
T |
|
| Q |
209 |
gagtctctacaacattgggttcatgtctctctacaatcactgaagnnnnnnncattctttctctcctgcatgcaccaatagtcacaataagtaattactc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14698812 |
gagtctctacaacattgggttcatgtctctctacaatcacggaagaaaaaaacattctttctctcctgcatgcaccaatagtcacaataagtaattactc |
14698911 |
T |
|
| Q |
309 |
aaacagagaaccaatcagaaacctaaaaatgaaagtnnnnnnnnttactccattgaagcaatgccagcaagcgctaaacccttgcattggtttggaggtt |
408 |
Q |
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| T |
14698912 |
aaacagagaaccaatcagaaacctaaaaatgaaagtaaaaaaaattactccattgaagcaatgccagcaagcgctaaacccttgcattggtttggaggtt |
14699011 |
T |
|
| Q |
409 |
tcacaagccaccattcatgt |
428 |
Q |
| |
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| T |
14699012 |
tcacaagccaccattcatgt |
14699031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 9 - 428
Target Start/End: Complemental strand, 17650286 - 17649868
Alignment:
| Q |
9 |
atcaaaggactcacagcaaaaccaaacacactagttatattcaaaatcaactctgttagaagctagtgcaatcaaacgagcctagagaaggatcaagagg |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17650286 |
atcaaaggacttacagcaaaaccaaacacactagttatattcaaaatcaactctgttagaagctagtgcaatcaaacgagcctagagaagggtcaagagg |
17650187 |
T |
|
| Q |
109 |
agtgagaaagaaaaagggtaacccacctcagaagaaaaaccattttgagatgcacgtgaagcgttgatcaaaccgtgaaacattacagtgatgccatctt |
208 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17650186 |
agtgagaaagaaaa-gggtaacccacctcagaagaaaaaccattttgagatgtacgtgaagcgttgatcaaaccgtgaaacattacagtgatgccatctt |
17650088 |
T |
|
| Q |
209 |
gagtctctacaacattgggttcatgtctctctacaatcactgaagnnnnnnncattctttctctcctgcatgcaccaatagtcacaataagtaattactc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17650087 |
gagtctctacaacattgggttcatgtctctctacaatcactgaagaaaaaaacattctttctctcctgcatgcaccaatagtcacaataagtaattactc |
17649988 |
T |
|
| Q |
309 |
aaacagagaaccaatcagaaacctaaaaatgaaagtnnnnnnnnttactccattgaagcaatgccagcaagcgctaaacccttgcattggtttggaggtt |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17649987 |
aaacagagaaccaatcagaaacctaaaaatgaaagtaaaaaaaattactccattgaagcaatgccagcaagcgctaaacccttgcattggtttggaggtt |
17649888 |
T |
|
| Q |
409 |
tcacaagccaccattcatgt |
428 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
17649887 |
tcacaagccaccattcatgt |
17649868 |
T |
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