View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_low_19 (Length: 332)
Name: NF20183_low_19
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 4571787 - 4571485
Alignment:
| Q |
14 |
cacagaagaaaccgccatcgcgtaagcgaccaattaatacaccaccaaacaagaaaccaccattgcctaaaccacctgttaataagccaccacacaaaaa |
113 |
Q |
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| T |
4571787 |
cacagaagaaaccgccatcgcgtaagcgaccaattaatacaccaccaaacaagaaaccaccattgcctaaaccacctgttaataagccaccacacaaaaa |
4571688 |
T |
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| Q |
114 |
accatcaaaccagagaccaccaccttatggtaaccagcctccacctagcatccatttctaaagcgtatttgcaagcaacaaggtttaccaatgctttgtt |
213 |
Q |
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| T |
4571687 |
accatcaaacaagagaccaccaccttatggtaaccagcctccacctagcatccatttctaaagcgtatttgcaagcaacaaggtttaccaatgctttgtt |
4571588 |
T |
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| Q |
214 |
ttattccttttgtatcatgtagggtcaagttttcgtttcccnnnnnnnaagcatcataaaaa-atatttctatttttcccttatgtaaggccaagttaag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
4571587 |
ttattccttttgtatcatgtagggtcaagttttcgtttccctttttttaagcatcataaaaatatatttctatttttcccttatgtatggccaagttaag |
4571488 |
T |
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| Q |
313 |
tga |
315 |
Q |
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||| |
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| T |
4571487 |
tga |
4571485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 4571868 - 4571775
Alignment:
| Q |
23 |
aaccgccatcgcgtaagcgaccaattaatacaccaccaaacaagaaaccaccattgcctaaaccacctgttaataagccaccacacaaaaaacc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| || |||||||||||| || ||||| |
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| T |
4571868 |
aaccgccatcgcgtaagcgaccaattaatacaccaccagacaagaaaccaccattgctaaagccaccatttcctaagccaccacagaagaaacc |
4571775 |
T |
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