View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20183_low_21 (Length: 329)

Name: NF20183_low_21
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20183_low_21
NF20183_low_21
[»] chr1 (1 HSPs)
chr1 (20-316)||(45767982-45768275)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 45767982 - 45768275
Alignment:
Q  20 aatagaatacactacaaaagtacaggtcaaaaggttactattacttagtaattacattttaaaaagctgccacacaccnnnnnnnnnnnnnnnnnn-tgg 118  Q
    |||||||||||||||||||||||||||||||| ||||||| ||    |||||||||||||||||||||||||||||||                   |||    
T  45767982 aatagaatacactacaaaagtacaggtcaaaatgttactacta----gtaattacattttaaaaagctgccacacaccaaaaaaataaaaaaaaaaatgg 45768077  T
Q  119 aaacatgtttcttttttctattttgtggaaaaagtggtaattaaaatgtcttcatacacaagcataagacaagcaatgtgtcaccttaaattgctacttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45768078 aaacatgtttcttttttctattttgtggaaaaagtggtaattaaaatgtcttcatacacaagcataagacaagcaatgtgtcaccttaaattgctacttc 45768177  T
Q  219 caattctattaaaacgactcaaagcaggtgagactttgttgctccttgaatcagaatcattgtctgaattagtagaccctacatcccaaagaccttga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45768178 caattctattaaaacgactcaaagcaggtgagactttgttgctccttgaatcagaatcattgtctgaattagtagaccctacatcccaaagaccttga 45768275  T

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