View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20183_low_26 (Length: 311)

Name: NF20183_low_26
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20183_low_26
NF20183_low_26
[»] chr2 (5 HSPs)
chr2 (35-115)||(35925904-35925985)
chr2 (227-294)||(6801054-6801122)
chr2 (227-294)||(35926125-35926193)
chr2 (227-294)||(39990583-39990651)
chr2 (227-301)||(35920134-35920209)
[»] chr6 (4 HSPs)
chr6 (227-300)||(10754597-10754671)
chr6 (226-300)||(10750279-10750354)
chr6 (226-300)||(10748683-10748758)
chr6 (227-287)||(18613098-18613159)
[»] chr3 (3 HSPs)
chr3 (227-299)||(31125751-31125824)
chr3 (227-294)||(38930471-38930539)
chr3 (227-294)||(53107642-53107710)
[»] chr7 (3 HSPs)
chr7 (227-294)||(23780472-23780540)
chr7 (227-294)||(43920610-43920678)
chr7 (227-294)||(40706109-40706177)
[»] chr4 (1 HSPs)
chr4 (227-294)||(38393563-38393631)
[»] chr1 (8 HSPs)
chr1 (227-294)||(39972786-39972854)
chr1 (227-300)||(22908321-22908395)
chr1 (227-299)||(48049405-48049478)
chr1 (227-294)||(29812825-29812893)
chr1 (227-294)||(48040176-48040244)
chr1 (227-294)||(48053130-48053198)
chr1 (227-294)||(48042228-48042296)
chr1 (227-294)||(48054682-48054750)


Alignment Details
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 35925904 - 35925985
Alignment:
Q  35 gtggattgtgaaacttgtaacattaagatattgtcaatg-aaaatcttgtggcttttcttacaatatttatagttctgtaat 115  Q
    |||||||| ||||||| ||||||| |||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||    
T  35925904 gtggattgagaaacttataacattgagatattgtcaatgaaaaatcttgtggcctttctcacaatatatatagttctgtaat 35925985  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 6801054 - 6801122
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  6801054 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 6801122  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 35926125 - 35926193
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  35926125 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 35926193  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 39990651 - 39990583
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  39990651 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 39990583  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 35920134 - 35920209
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtcctttg 301  Q
    |||||||||||||||||||||| ||||| || ||||||||| |  ||||||||| |||||||| | ||| ||||||    
T  35920134 ggggcattccgagaattgaacttgggacctctcgcaccctaagcaagaatcataccactagaccagatgccctttg 35920209  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 10754597 - 10754671
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtccttt 300  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| ||||| |||||    
T  10754597 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccttt 10754671  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 10750279 - 10750354
Alignment:
Q  226 gggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtccttt 300  Q
    ||||||||||||||||||||||||||||| ||  |||||||| | |||||||||| |||||||  ||||| |||||    
T  10750279 gggggcattccgagaattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatgcccttt 10750354  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 10748683 - 10748758
Alignment:
Q  226 gggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtccttt 300  Q
    |||||||||||||||||||| |||| ||| || | |||||||   ||||||||||||||||||| ||||| |||||    
T  10748683 gggggcattccgagaattgagctcgagacctctcacaccctaaacgagaatcatatcactagaccaaatgcccttt 10748758  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 18613159 - 18613098
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactaga 287  Q
    ||||||||||||||||| |||||||||| || ||||||||| |  ||||||||| |||||||    
T  18613159 ggggcattccgagaattaaactcgggacctctcgcaccctaagcaagaatcataccactaga 18613098  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 31125824 - 31125751
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtcctt 299  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| ||||| ||||    
T  31125824 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccctt 31125751  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 38930471 - 38930539
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  38930471 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 38930539  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 53107710 - 53107642
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  53107710 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 53107642  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 23780540 - 23780472
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  23780540 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 23780472  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 43920678 - 43920610
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  43920678 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 43920610  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 40706177 - 40706109
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||||||||||||||| || |||||| || | ||||||||||  ||||||| |||||    
T  40706177 ggggcattccgagaattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatg 40706109  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 38393563 - 38393631
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  38393563 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 38393631  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 39972786 - 39972854
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  39972786 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 39972854  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 22908395 - 22908321
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtccttt 300  Q
    |||||||||||||||||||||||| ||| || ||||||||| | |||||||||| |||||||| ||||| |||||    
T  22908395 ggggcattccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatgcccttt 22908321  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 48049478 - 48049405
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtcctt 299  Q
    |||||||||||||||| ||||||||||| || ||||||| | | |||||||||| |||||||| ||||| ||||    
T  48049478 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctt 48049405  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 29812825 - 29812893
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||| ||||||||||| || ||||||| | | |||||||||| |||||||| |||||    
T  29812825 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 29812893  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 48040244 - 48040176
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||| ||||||||||| || ||||||| | | |||||||||| |||||||| |||||    
T  48040244 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48040176  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 48053198 - 48053130
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||||||||||||||| || ||||||| | | |||||| ||| |||||||| |||||    
T  48053198 ggggcattccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagaccaaatg 48053130  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 48042296 - 48042228
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    |||||||||||||||| |||||||| || || ||||||| | | |||||||||| |||||||| |||||    
T  48042296 ggggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatg 48042228  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 48054750 - 48054682
Alignment:
Q  227 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 294  Q
    ||||||||||||||||||||||||| || || ||||||| | | |||||||||| | |||||| |||||    
T  48054750 ggggcattccgagaattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatg 48054682  T

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