View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_low_28 (Length: 284)
Name: NF20183_low_28
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 26885786 - 26885997
Alignment:
| Q |
9 |
atcataggcacatacttctcccacatatgatccaccgtcatacaggtatacgataacctacgaagaagaataaaacatcatagtcatcttgactataatg |
108 |
Q |
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| T |
26885786 |
atcataggcacatacttctcctacatatgatccaccatcatacaggtatacgataacctacgaagaagaataaaacatcatagtcatcttgactatgatg |
26885885 |
T |
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| Q |
109 |
cagatgcaatgcctgcctaatcatcaagttataaataaacacgaaccaaccttaagactatctgccaaagtatcgtccaggagacctttttcacgaggac |
208 |
Q |
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| T |
26885886 |
cagatgcaatgcctgcctaatcatcaatttataaataaacacgaaccaaccttaagactatctgccaaagtatcgtccaggagacctttttcacgaggac |
26885985 |
T |
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| Q |
209 |
gttgaaggagat |
220 |
Q |
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| T |
26885986 |
gccgaaggagat |
26885997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 26885964 - 26886034
Alignment:
| Q |
214 |
aggagatctttttcacgaggatgccgaatgagattggcggatgtcaaaacaatatgagcattatcggcatc |
284 |
Q |
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| T |
26885964 |
aggagacctttttcacgaggacgccgaaggagattggcggatgtcaaaacaatatgagcattattggcatc |
26886034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 26631351 - 26631298
Alignment:
| Q |
231 |
aggatgccgaatgagattggcggatgtcaaaacaatatgagcattatcggcatc |
284 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26631351 |
aggacgccgaatgagattggcggatgtcaaaacaatatgagcattattggcatc |
26631298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 26631583 - 26631508
Alignment:
| Q |
9 |
atcataggcacatacttctcccacatatgatccaccgtcatacaggtatacgataacctacgaagaagaataaaac |
84 |
Q |
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||||||||||| ||||| |||| | ||||||| ||||||||||||| ||| |||||||| |||||||||||||| |
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| T |
26631583 |
atcataggcacgtacttgtccctcgtatgatcgaccgtcatacaggaatatcttaacctacaaagaagaataaaac |
26631508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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