View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_low_31 (Length: 272)
Name: NF20183_low_31
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 6623038 - 6623271
Alignment:
| Q |
24 |
tcgagggtgagcagggaaatgcttcaagagtagaacgagtgggacatcgcaatgccactgtaatgtagaagttactatgttacatacttcaagaaaagga |
123 |
Q |
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| T |
6623038 |
tcgagggtgagcagggaaatgcttcaagagtagagcgagtgggacatcccaatgccactgtaatgtagaagttactatgttacatacttcaagaaaagga |
6623137 |
T |
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| Q |
124 |
taatggattgtaaagtagaagttactttctcatatacttaaagataaggataatgcataaaaattatgcagaacataatggtcaagttgtacgcaggatg |
223 |
Q |
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| T |
6623138 |
taatggattgtaaagtagaagttactttctcatatacttaaagataaggataatgcataaaaattatgcagaacataatggtcaagttgtacgcaggatg |
6623237 |
T |
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| Q |
224 |
ggtcatggattcagaggttcaaaaatgtaggaag |
257 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
6623238 |
ggtcatggattcagaggttaaaaaatgtaggaag |
6623271 |
T |
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