View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20183_low_32 (Length: 270)

Name: NF20183_low_32
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20183_low_32
NF20183_low_32
[»] chr5 (1 HSPs)
chr5 (18-263)||(31510201-31510443)
[»] chr4 (6 HSPs)
chr4 (75-138)||(3517280-3517343)
chr4 (89-145)||(7538859-7538915)
chr4 (104-139)||(12743279-12743314)
chr4 (77-138)||(3482972-3483033)
chr4 (104-141)||(5872595-5872632)
chr4 (104-145)||(52094713-52094754)
[»] chr8 (1 HSPs)
chr8 (91-135)||(10380439-10380483)
[»] chr3 (2 HSPs)
chr3 (95-145)||(20628866-20628916)
chr3 (87-137)||(30844877-30844927)
[»] chr2 (1 HSPs)
chr2 (104-145)||(7859217-7859258)
[»] chr1 (1 HSPs)
chr1 (104-141)||(50168701-50168738)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 31510201 - 31510443
Alignment:
Q  18 tatgttatccttgaagagctcagaggatcttggtataatgcacaaagtaagagtaggtcttgtctccagcctcaatgttcacttagatgttcaccaaatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31510201 tatgttatccttgaagagctcagaggatcttggtataatgcacaaagtaagagtaggtcttgtctccagcctcaatgttcacttagatgttcaccaaatc 31510300  T
Q  118 atcaaagattttgttgaactccatcaatgctctcttatgattttctctccaccatcttaaatgagtaaagttttttgtttcaggaaatacctattaccca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31510301 atcaaagattttgttgaactccatcaatgctctcttatgattttctctccaccatcttaaatgagtaaagttttttgtttcaggaaatacctattaccca 31510400  T
Q  218 acaaattggtaatattcaatgactccatcttgcggttgtctccttt 263  Q
    |||||||||||||||| ||||||||||   ||||||||||||||||    
T  31510401 acaaattggtaatatttaatgactcca---tgcggttgtctccttt 31510443  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 3517343 - 3517280
Alignment:
Q  75 tcttgtctccagcctcaatgttcacttagatgttcaccaaatcatcaaagattttgttgaactc 138  Q
    |||||||| || ||| ||| |||||||  ||||||||||||||||||| |||||||||||||||    
T  3517343 tcttgtcttcatcctaaattttcacttcaatgttcaccaaatcatcaaggattttgttgaactc 3517280  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 7538915 - 7538859
Alignment:
Q  89 tcaatgttcacttagatgttcaccaaatcatcaaagattttgttgaactccatcaat 145  Q
    ||||| |||||||  ||||||||||||| ||||| |||||||||||||||| |||||    
T  7538915 tcaattttcacttcaatgttcaccaaattatcaaggattttgttgaactccctcaat 7538859  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 12743279 - 12743314
Alignment:
Q  104 atgttcaccaaatcatcaaagattttgttgaactcc 139  Q
    |||||| |||||||||||||||||||||||||||||    
T  12743279 atgttctccaaatcatcaaagattttgttgaactcc 12743314  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 3483033 - 3482972
Alignment:
Q  77 ttgtctccagcctcaatgttcacttagatgttcaccaaatcatcaaagattttgttgaactc 138  Q
    |||||| || ||||||| |||||||  ||| |||||||||||||||  ||||||||||||||    
T  3483033 ttgtcttcatcctcaattttcacttcaatgatcaccaaatcatcaagaattttgttgaactc 3482972  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 5872632 - 5872595
Alignment:
Q  104 atgttcaccaaatcatcaaagattttgttgaactccat 141  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  5872632 atgttctccaaatcatcaaggattttgttgaactccat 5872595  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 52094713 - 52094754
Alignment:
Q  104 atgttcaccaaatcatcaaagattttgttgaactccatcaat 145  Q
    |||||| |||||||||||| |||||||||||||||| |||||    
T  52094713 atgttctccaaatcatcaaggattttgttgaactccgtcaat 52094754  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 10380439 - 10380483
Alignment:
Q  91 aatgttcacttagatgttcaccaaatcatcaaagattttgttgaa 135  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||    
T  10380439 aatgtttacttcaatgttcaccaaatcatcaaagattttgttgaa 10380483  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 20628916 - 20628866
Alignment:
Q  95 ttcacttagatgttcaccaaatcatcaaagattttgttgaactccatcaat 145  Q
    |||||||  ||||||| ||||||||||| |||||||||||||||| |||||    
T  20628916 ttcacttcaatgttcaacaaatcatcaatgattttgttgaactccgtcaat 20628866  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 30844877 - 30844927
Alignment:
Q  87 cctcaatgttcacttagatgttcaccaaatcatcaaagattttgttgaact 137  Q
    ||||||| |||||||  |||| |||||||||||||| ||||||||||||||    
T  30844877 cctcaattttcacttcaatgtgcaccaaatcatcaaggattttgttgaact 30844927  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 7859217 - 7859258
Alignment:
Q  104 atgttcaccaaatcatcaaagattttgttgaactccatcaat 145  Q
    ||||||| |||||||||||||||||||||||| ||| |||||    
T  7859217 atgttcatcaaatcatcaaagattttgttgaattccgtcaat 7859258  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 50168701 - 50168738
Alignment:
Q  104 atgttcaccaaatcatcaaagattttgttgaactccat 141  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  50168701 atgttctccaaatcatcaaggattttgttgaactccat 50168738  T

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