View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_low_4 (Length: 594)
Name: NF20183_low_4
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 14 - 578
Target Start/End: Complemental strand, 10024877 - 10024298
Alignment:
| Q |
14 |
caaaggtacaagaaacttacatgtgccatctcacacactttatgctgacaatgtgatgatattttgcaaagggaaaaagtcttgccttctgactcttaaa |
113 |
Q |
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| T |
10024877 |
caaaggtacaagaaacttacatgtgccatctcacacactttatgctgacaatgtgatgatattttgcaaagggaaaaagtcttgccttctgactcttaaa |
10024778 |
T |
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| Q |
114 |
caacttttcattgattatgcagcctgttatggttagattattaacccttttaagccaact---------ggttccattaatgctagcagactatctcagc |
204 |
Q |
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| T |
10024777 |
c---ttttcattgattatgcagcctgtt----ttagattattaacccttttaagccaactttgtacactggttccattaatgctagcagactatctcagc |
10024685 |
T |
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| Q |
205 |
ttgttcattttctacgcttaaacattggttatcttccatgcattcatatacttaggtgtccctatctttagagggagaccataagctatttaaattgtct |
304 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10024684 |
ttgttcatttgctacgcttaaacattggttatcttccatgcattcatatacttaggtgtccctatctttagagggagaccataagctatttaaattgcct |
10024585 |
T |
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| Q |
305 |
tcttggaaagcctctctcctttctatagccgacacaactcaacttgtaatctctgtaatacaaagtatgatgatgcagatcctt---------------c |
389 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10024584 |
tcttggaaagcctctctcctttctatagccgacaaaactcaacttgtaatctctgtaatacaaagtatgatgatgcagatcctttcagtttactccaggc |
10024485 |
T |
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| Q |
390 |
cagtttcaatccttgtacaagaaatttcatatggagtggggacactgagaagagaaaggtggtaattgtagcatggcgcaaagtttgtaaacccaaagag |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10024484 |
cagtttcaatccttgtacaagaaatttcatatggagtggggacactgagaagagaaaggtggtaattgtagcatggcacaaagtttgtaaacccaaagag |
10024385 |
T |
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| Q |
490 |
gaagggagtcttggtttaagatctcttacagtcctaaaatacagattggttatcatttcttttcttcaatatatggtgcataataaagt |
578 |
Q |
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| T |
10024384 |
gaagggagtcttggtttaagatctcttacagtcctaaaatacagattggttatcatttcttttcttca--atatggtgcatcataaagt |
10024298 |
T |
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