View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20183_low_44 (Length: 241)
Name: NF20183_low_44
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_low_44 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 2338658 - 2338872
Alignment:
| Q |
13 |
gcagagatgagtcactgtcttttaaggaagaattcagagataaaagctcaaatgaccaatccaagttagaacacaaaccttctgaaataaccattttttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2338658 |
gcagagatgagtcactgtcttttaaggaagaattcagagataaaagctcaaatgaccaatccaagttagaacacaaaccttctgaaataaccattttttc |
2338757 |
T |
|
| Q |
113 |
aattattgatttcttgtatcttttactgtctagcatttataatttagtgtctgaagcattcaaaattatatctgactgattattattttaggtcaaaatc |
212 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2338758 |
aattatagatttcttgtatcttttactgtctagcatttataatttagcgtctgaagcattcaaaattatatctgactgattattattttaggtcaaaatc |
2338857 |
T |
|
| Q |
213 |
tgcgacgaaaatgct |
227 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2338858 |
tgcgacgaaaatgct |
2338872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 2345599 - 2345710
Alignment:
| Q |
13 |
gcagagatgagtcactgtcttttaaggaagaattcagagataaaagctcaaatgaccaatccaagttagaacacaaaccttctgaaataaccattttttc |
112 |
Q |
| |
|
||||||||||||| ||| || |||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | |||| | |
|
|
| T |
2345599 |
gcagagatgagtcggtgtacttaaaggcagagttcagagataaaagttcaaatgaccaatccaagttagaacacataccttctgaaataactaattttcc |
2345698 |
T |
|
| Q |
113 |
aattattgattt |
124 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2345699 |
aattattgattt |
2345710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University