View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20183_low_47 (Length: 235)
Name: NF20183_low_47
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_low_47 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 11367719 - 11367516
Alignment:
| Q |
20 |
ctaataccaaaccagaggtccaaaacagaccaggtatgccaccaccaaaccacgcattccaattctagaccaccaaaacagaccgcctgcaaacacatcg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11367719 |
ctaataccaaaccagaggtccaaaacagaccaggtatgccaccaccaaaccgcgcattccgattctagaccaccaaaacagaccgcctgcaaacacatcg |
11367620 |
T |
|
| Q |
120 |
taaggcaaagcacataattgggttccaccaccattcatattataaacaagagctcttcgccattctactaaggaaccacttccaagacaccacttttata |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11367619 |
taaggcaaagcacataattgggttccaccaccattcatattataaacaagagctcttcgccattctactaaggaaccacttccaagacaccacttttatt |
11367520 |
T |
|
| Q |
220 |
ttct |
223 |
Q |
| |
|
|||| |
|
|
| T |
11367519 |
ttct |
11367516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University