View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_low_5 (Length: 590)
Name: NF20183_low_5
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 13 - 459
Target Start/End: Complemental strand, 30215839 - 30215397
Alignment:
| Q |
13 |
cacagaagaagagagaaagagaaatttgatgttgttgtatttatactatgagagagatgaattaacggcgtgagtgtgaaacgttaatttaaacggaaaa |
112 |
Q |
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| T |
30215839 |
cacagaagaagagagaaagagaaatttgaggttgttgtatttatactatgaaagaggagaattaacggcgtgagtagaaaacgttaatttaaacggaaaa |
30215740 |
T |
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| Q |
113 |
tgtttgaaggaatttgtgttttgtcattttgtttgttattacatacagcgagtgagcggaaacaatggtcgagtgcgtagaagacataagggacccacgt |
212 |
Q |
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| T |
30215739 |
tgtttgaaggaatttgggttttgtcattttgtttgttattacatacagcgagtgagcggaaacaatggtcgagtgcgtagaagacataagggacccacgt |
30215640 |
T |
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| Q |
213 |
gtttgggttgattgtttgtaacgtgtttggagaaattacacgattgagatttgggattatttttgtatgatgattgatgactaggttaaggttgggttgc |
312 |
Q |
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| T |
30215639 |
gtttgggttgattgtttgtaacgtgtttggagaaattacacggttgagatttcggattatttttgtatgatgattgatgactaggttaaggttgggttgc |
30215540 |
T |
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| Q |
313 |
atgtcgtttgttaattgatggatcaaaaatattggaggaatattcatcatcataattgagaacttttcgcaacaatatagcatgataataagggaaatta |
412 |
Q |
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| T |
30215539 |
atgtcgtttgttaattgatgaatgaaaaatattggagaaatattcatcatcataattgagaacttttcgcaacaatatagcatgataataagggaaatta |
30215440 |
T |
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| Q |
413 |
aattaatactacttatgatcatttatagcaaaattagatatgttttt |
459 |
Q |
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| T |
30215439 |
aattaatac----tatgttcatttatagcaaaattggatatgttttt |
30215397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 471 - 583
Target Start/End: Complemental strand, 30215315 - 30215203
Alignment:
| Q |
471 |
aaaatgagtacattttaggttcaaattctttgcttttttcatctaatttgaagnnnnnnnnnnnnncaagaacttttgtaggtgatctctttcaaaaata |
570 |
Q |
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| T |
30215315 |
aaaatgagtacattttaggttcaaattctttgcttttttcatctaatttgaagaaaaaaccaaaaacaagaacttttataggtgatctctttgaaaaata |
30215216 |
T |
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| Q |
571 |
ttcatatgattgg |
583 |
Q |
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| T |
30215215 |
ttcatatgattgg |
30215203 |
T |
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