View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20183_low_52 (Length: 210)

Name: NF20183_low_52
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20183_low_52
NF20183_low_52
[»] scaffold0093 (1 HSPs)
scaffold0093 (18-189)||(21188-21359)
[»] chr5 (8 HSPs)
chr5 (18-189)||(26834842-26835012)
chr5 (78-189)||(26745780-26745889)
chr5 (78-166)||(26792374-26792462)
chr5 (79-146)||(26729731-26729798)
chr5 (18-93)||(26792481-26792552)
chr5 (21-93)||(26729820-26729885)
chr5 (118-164)||(26792288-26792334)
chr5 (18-64)||(26745925-26745971)
[»] scaffold0759 (2 HSPs)
scaffold0759 (18-166)||(2541-2685)
scaffold0759 (118-164)||(2455-2501)
[»] scaffold0233 (1 HSPs)
scaffold0233 (42-166)||(17839-17959)
[»] chr3 (4 HSPs)
chr3 (18-143)||(12124106-12124218)
chr3 (18-143)||(12110418-12110528)
chr3 (18-74)||(12128307-12128363)
chr3 (111-143)||(12128253-12128285)
[»] scaffold0112 (3 HSPs)
scaffold0112 (18-64)||(17121-17167)
scaffold0112 (78-117)||(17212-17251)
scaffold0112 (118-164)||(40835-40881)
[»] scaffold0416 (1 HSPs)
scaffold0416 (118-164)||(7294-7340)


Alignment Details
Target: scaffold0093 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 21359 - 21188
Alignment:
Q  18 aaatacaattgatcaattgaaaacaaaggttgttttatttaaagtagtagatgcatgcatgataacatgcatggttggtttttagtttttgagacatatc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21359 aaatacaattgatcaattgaaaacaaaggttgttttatttaaagtagtagatgcatgcatgataacatgcatggttggtttttagtttttgagacatata 21260  T
Q  118 attcttaagtggcaatttccaaagccgtcctcaagtagtctttttcaattgcgtgacttgcatatacctcca 189  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21259 attcttaagtggcaatttccaaagccatcctcaagtagtctttttcaattgcgtgacttgcatatacctcca 21188  T

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Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 26835012 - 26834842
Alignment:
Q  18 aaatacaattgatcaattgaaaacaaaggttgttttatttaaagtagtagatgcatgcatgataacatgcatggttggtttttagtttttgagaca---t 114  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||     | |||||||||||| |||||||||||||||||||||||||||   |    
T  26835012 aaatacaattgatcaattggaaacaaaggttgttttatttaaagtatta----aaagcatgataacatacatggttggtttttagtttttgagacatatt 26834917  T
Q  115 atcattcttaagtggcaatttccaaagccgtcctcaagtagtctttttcaattgcgtgacttgcatatacctcca 189  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||||| ||||||    
T  26834916 atcattcttaagtggcaatttccaaagccatcctcaattagtcattttcaattgcgcgacttgcatattcctcca 26834842  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 26745889 - 26745780
Alignment:
Q  78 gataacatgcatggttggtttttagtttttgagacatatcattcttaagtggcaatttccaaagccgtcctcaagtagtctttttcaattgcgtgacttg 177  Q
    |||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||| |||| ||||||||||||||||||| | ||| ||||    
T  26745889 gataacatgcatggttggtttttagtttttgagacat--catttttaagtggcaatttccaaagtcgtcttcaagtagtctttttcaatagagtgtcttg 26745792  T
Q  178 catatacctcca 189  Q
    ||||||||||||    
T  26745791 catatacctcca 26745780  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 26792462 - 26792374
Alignment:
Q  78 gataacatgcatggttggtttttagtttttgagacatatcattcttaagtggcaatttccaaagccgtcctcaagtagtctttttcaat 166  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||    
T  26792462 gataacatgcatggttgatttttagtttttgagacatatcattcttaagtagaaatttccaaagctgtcttcaagtagtctttttcaat 26792374  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 26729798 - 26729731
Alignment:
Q  79 ataacatgcatggttggtttttagtttttgagacatatcattcttaagtggcaatttccaaagccgtc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26729798 ataacatgcatggttggtttttagtttttgagacatatcattcttaagtgacaatttccaaagccgtc 26729731  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 26792552 - 26792481
Alignment:
Q  18 aaatacaattgatcaattgaaaacaaaggttgttttatttaaagtagtagatgcatgcatgataacatgcatggtt 93  Q
    ||||||||||||| ||| | ||| |||||||||||||||||||||||||||||    |||||||||||||||||||    
T  26792552 aaatacaattgatgaataggaaataaaggttgttttatttaaagtagtagatg----catgataacatgcatggtt 26792481  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 26729885 - 26729820
Alignment:
Q  21 tacaattgatcaattgaaaacaaaggttgttttatttaaagtagtagatgcatgcatgataacatgcatggtt 93  Q
    ||||||||||| |||| |||||||||||| ||||||||||||||       ||||||||||||||||||||||    
T  26729885 tacaattgatcgattggaaacaaaggttgctttatttaaagtag-------atgcatgataacatgcatggtt 26729820  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 26792334 - 26792288
Alignment:
Q  118 attcttaagtggcaatttccaaagccgtcctcaagtagtctttttca 164  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||    
T  26792334 attcttaagtggcaatttccaaagccatcttcaagtagtttttttca 26792288  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 26745971 - 26745925
Alignment:
Q  18 aaatacaattgatcaattgaaaacaaaggttgttttatttaaagtag 64  Q
    |||||||||| |||||||  |||||||||||| ||||||||||||||    
T  26745971 aaatacaattcatcaattagaaacaaaggttgctttatttaaagtag 26745925  T

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Target: scaffold0759 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 2685 - 2541
Alignment:
Q  18 aaatacaattgatcaattgaaaacaaaggttgttttatttaaagtagtagatgcatgcatgataacatgcatggttggtttttagtttttgagacatatc 117  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  2685 aaatacaattgatcaataggaaataaaggttgttttatttaaagtagtagatgcatg----ataacatgcatggttggtttttagtttttgagacatatc 2590  T
Q  118 attcttaagtggcaatttccaaagccgtcctcaagtagtctttttcaat 166  Q
    |||||||||| | |||||||||||| ||  |||||||||||||||||||    
T  2589 attcttaagtagaaatttccaaagctgttttcaagtagtctttttcaat 2541  T

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Target: scaffold0759; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 2501 - 2455
Alignment:
Q  118 attcttaagtggcaatttccaaagccgtcctcaagtagtctttttca 164  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||    
T  2501 attcttaagtggcaatttccaaagccatcttcaagtagtttttttca 2455  T

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Target: scaffold0233 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 17959 - 17839
Alignment:
Q  42 aaaggttgttttatttaaagtagtagatgcatgcatgataacatgcatggttggtttttagtttttgagacatatcattcttaagtggcaatttccaaag 141  Q
    |||||||||||||||||||||| ||||||||||    |||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  17959 aaaggttgttttatttaaagtattagatgcatg----ataacatgcatggttgctttttagtttttgagacatatcattcttaagtagaaatttccaaag 17864  T
Q  142 ccgtcctcaagtagtctttttcaat 166  Q
    | ||| | |||||||||||||||||    
T  17863 ctgtctttaagtagtctttttcaat 17839  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 12124218 - 12124106
Alignment:
Q  18 aaatacaattgatcaattgaaaacaaaggttgttttatttaaagtagtagatgcatgcatgataacatgcatggttggtttttagtttttgagacatatc 117  Q
    |||| |||| ||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||  ||||||||||||||||         |||||||||    
T  12124218 aaatccaatcgatcaattggaaacaaaggttgttttatttaaagtagtacat--atgcatgata--atgcatggttggtttt---------agacatatc 12124132  T
Q  118 attcttaagtggcaatttccaaagcc 143  Q
    ||||||||||||||||||||||||||    
T  12124131 attcttaagtggcaatttccaaagcc 12124106  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 12110528 - 12110418
Alignment:
Q  18 aaatacaattgatcaattgaaaacaaaggttgttttatttaaagtagtagatgcatgcatgataacatgcatggttggtttttagtttttgagacatatc 117  Q
    |||| |||||||| ||||| |||||||||||||||||||||||||||||    |||||||||||  ||||||||||||||||         |||||||||    
T  12110528 aaatccaattgataaattggaaacaaaggttgttttatttaaagtagta----catgcatgata--atgcatggttggtttt---------agacatatc 12110444  T
Q  118 attcttaagtggcaatttccaaagcc 143  Q
    ||||||||||||||||||||||||||    
T  12110443 attcttaagtggcaatttccaaagcc 12110418  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 12128363 - 12128307
Alignment:
Q  18 aaatacaattgatcaattgaaaacaaaggttgttttatttaaagtagtagatgcatg 74  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  12128363 aaatccaattgatcaattggaaacaaaggttgttttatttaaagtagtatatgcatg 12128307  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 12128285 - 12128253
Alignment:
Q  111 acatatcattcttaagtggcaatttccaaagcc 143  Q
    ||||||||||||||||| |||||||||||||||    
T  12128285 acatatcattcttaagttgcaatttccaaagcc 12128253  T

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Target: scaffold0112 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 17121 - 17167
Alignment:
Q  18 aaatacaattgatcaattgaaaacaaaggttgttttatttaaagtag 64  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  17121 aaatacaattgatcaattgaaaacaaaagttgttttatttaaagtag 17167  T

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Target: scaffold0112; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 17212 - 17251
Alignment:
Q  78 gataacatgcatggttggtttttagtttttgagacatatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17212 gataacatgcatggttggtttttagtttttgagacatatc 17251  T

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Target: scaffold0112; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 40835 - 40881
Alignment:
Q  118 attcttaagtggcaatttccaaagccgtcctcaagtagtctttttca 164  Q
    |||||||||||||||||||||||||| || |||||||||||||||||    
T  40835 attcttaagtggcaatttccaaagccatcttcaagtagtctttttca 40881  T

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Target: scaffold0416 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 7294 - 7340
Alignment:
Q  118 attcttaagtggcaatttccaaagccgtcctcaagtagtctttttca 164  Q
    |||||||||||||||||||||||||| || |||||||||||||||||    
T  7294 attcttaagtggcaatttccaaagccatcttcaagtagtctttttca 7340  T

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