View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20184_high_1 (Length: 452)
Name: NF20184_high_1
Description: NF20184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20184_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 191 - 438
Target Start/End: Complemental strand, 34872817 - 34872570
Alignment:
| Q |
191 |
ttttttgtgacaaattcaaatatagtatcaaaataattttaaattttatgtacaaaaatatgagttgtgtacattaaaataattaaataaaggacccgtt |
290 |
Q |
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| T |
34872817 |
ttttttgtgacaaattcaaatatagtatcaaaataattttaaattttatgtacaacaatatgagttgtgtacattaaaagaattaaataaaggacccgtt |
34872718 |
T |
|
| Q |
291 |
tgcaccctataattgttttcttttaagcttaattattgacatgttttatgtactttatgttcgtaggaaaaatgcagcacattcataagcttgttaagaa |
390 |
Q |
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| T |
34872717 |
tgcaccctataattgttttcttttaagcttagttactaacatgttttccgtactttatgttcgtaggaaaaatgcagcacattcataagcttgttaagca |
34872618 |
T |
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| Q |
391 |
atctagcaggaagttggccagccgaggcggcggtaggaggatagacat |
438 |
Q |
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| T |
34872617 |
atctagcaggaagttggccagccgaggcggcggtaggaggatagacat |
34872570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 34873049 - 34872855
Alignment:
| Q |
1 |
ctttgcattatcatttcatctctcaaccatatatttatttcatctcatccatannnnnnnnnnnnngaaagaagtctcaaccatatatagtgttaattaa |
100 |
Q |
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| T |
34873049 |
ctttgcattatcatttcatctc--aaccatatatttatttcatctcaaccatattttttgggttttgaaagaagtctcaaccatatatagtgttaattaa |
34872952 |
T |
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| Q |
101 |
ttttttctatcaatgatctatgaaagacataagcataaaagtgctaattgaagttcttgtgggccgcaaagcgtcaccctacttcctagcttttttg |
197 |
Q |
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| T |
34872951 |
ttttttctatcaataatctatgaaagacataagcataaaagtgctaattgaagttcttgtgggccgcaaagcgtcaccctacttgctagcttatttg |
34872855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 204 - 310
Target Start/End: Original strand, 27951239 - 27951345
Alignment:
| Q |
204 |
attcaaatatagtatcaaaataattttaaattttatgtacaaaaatatgagttgtgtacattaaaataattaaataaaggacccgtttgcaccctataat |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||||| |||||||||||||||| |||| ||||||| || |
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| T |
27951239 |
attcaaatatagtatcaaaataattttaaattttatgtaaaacaatatgagttgcgtagattaaaagaattaaataaaggacctatttgtaccctatgat |
27951338 |
T |
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| Q |
304 |
tgttttc |
310 |
Q |
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| T |
27951339 |
tgttttc |
27951345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 27948235 - 27948282
Alignment:
| Q |
136 |
taaaagtgctaattgaagttcttgtgggccgcaaagcgtcaccctact |
183 |
Q |
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| T |
27948235 |
taaaagtgctaattaaagctcttgtgggccgcaaagcgtcaccctact |
27948282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 27948169 - 27948219
Alignment:
| Q |
86 |
tatagtgttaattaa--ttttttctatcaatgatctatgaaagacataagc |
134 |
Q |
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| T |
27948169 |
tatagtgttaattaaatttttttctatcaataatctatgaaagacataagc |
27948219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 27947350 - 27947396
Alignment:
| Q |
5 |
gcattatcatttcatctctcaaccatatatttatttcatctcatccata |
53 |
Q |
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| T |
27947350 |
gcattatcatttcatctc--aaccatatatttatttcatctcaaccata |
27947396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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