View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20184_high_3 (Length: 214)
Name: NF20184_high_3
Description: NF20184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20184_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 35032876 - 35032687
Alignment:
| Q |
8 |
agtgagatgaagcagaataagagaagagaaaaagtaacagagaataaagtattatctcgaatatcttatttagtcattttcatcatactagtttgcataa |
107 |
Q |
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| T |
35032876 |
agtgagagaaagcagaataagagaagagaaaaagtaacagagaataaaatattatctcgaatatcttatttagtcattttcatcatactagtttgcataa |
35032777 |
T |
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| Q |
108 |
ctgagaggaaacaattgaagaacgatccactcaatttcaatgtcttcaatattgctgttgaagttgtcaggttagatttatattaaatat |
197 |
Q |
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| T |
35032776 |
ctgagaggaaacaattgaaggacgatccactcaatttcaatgtcttcaatattgctgttgaagttgtcaggttagatttatattaaatat |
35032687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 34953314 - 34953154
Alignment:
| Q |
26 |
aagagaagagaaaaagtaacagagaataaagtattatctcgaatatcttatttagtcattttcatcatactagtttgcataactgagaggaaacaattga |
125 |
Q |
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| T |
34953314 |
aagagaagaggaaaagttacagagaatttgatattttctcaactctcctatttagtcatattcatcattctagtatgcataactgagaggaaaaaattga |
34953215 |
T |
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| Q |
126 |
agaacgatccactcaatttcaatgtcttcaatattgctgttgaagttgtcaggttagattt |
186 |
Q |
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| T |
34953214 |
aggaagatcctcttaatttcaacgttttgaatattgttgttgaagttatcaggttagattt |
34953154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 34971975 - 34971863
Alignment:
| Q |
74 |
tatttagtcattttcatcatactagtttgcataactgagaggaaacaattgaagaacgatccactcaatttcaatgtcttcaatattgctgttgaagttg |
173 |
Q |
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| T |
34971975 |
tatttagtcatattcatcattctagtgtgcataactgagaggaaaaaattgaaggaagatcctctcaatttcaacgttttgaatattgttgttgaagttg |
34971876 |
T |
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| Q |
174 |
tcaggttagattt |
186 |
Q |
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| T |
34971875 |
taaggttagattt |
34971863 |
T |
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