View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20184_low_2 (Length: 416)
Name: NF20184_low_2
Description: NF20184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20184_low_2 |
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| [»] scaffold0223 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 44 - 395
Target Start/End: Complemental strand, 19841555 - 19841206
Alignment:
| Q |
44 |
tgccttattctcatgaatgggtacgttgacggtgtgcaagattagtagcttaacattgcttgctgagttgtttgaggatagcggatgcttcctcctttat |
143 |
Q |
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||||||||||| |||||||| || ||||||||||| ||||||| ||||| | ||| ||| ||||||| ||||||| |||||| |||||||||||||| |
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| T |
19841555 |
tgccttattcttatgaatggata----gacggtgtgcaggattagttgcttagc-ttgtttggtgagttggttgaggacagcggaagcttcctcctttat |
19841461 |
T |
|
| Q |
144 |
ctgttttggagtttagtagtgtcggcctctgattaggatatcgagtcttacttttgtcgttgctttatgatgagattatt----atctgactgttgagat |
239 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19841460 |
ctactttggagtttagtagtgtcgggctctgattaggatatcgagtcttacttttgtcgttgctttatgatgagattatttattatctgactgttgagat |
19841361 |
T |
|
| Q |
240 |
atttttatgttctgagccttgttatggcctttgagatttttactagatgtacttgatgatgagttaatgtcactgagatttttatgttgattgttgaaat |
339 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| || ||||||||| |
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| T |
19841360 |
atttttatgtt-tgagccttgttatggcctttgagatttttactaattgtacttgaggatgacttaatgtcactgagatttttatgccgactgttgaaat |
19841262 |
T |
|
| Q |
340 |
tttccactacgatgtttatgaaactgaatctttgcatgtttttgaaatgaatgatg |
395 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19841261 |
tttccgctgcgatgtttatgaaactgaatctttgcatgtttttgaaatgaatgatg |
19841206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19841627 - 19841590
Alignment:
| Q |
1 |
ttattttcaattgattatgctttaattgatttgaatga |
38 |
Q |
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| T |
19841627 |
ttattttcgtttgattatgctttaattgatttgaatga |
19841590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 36 - 396
Target Start/End: Complemental strand, 35564910 - 35564568
Alignment:
| Q |
36 |
tgaccgcctgccttattctcatgaatgggtacgttgacggtgtgcaagattagtagcttaacattgcttgctgagttgtttgaggatagcggatgcttcc |
135 |
Q |
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||||| ||||||||||||| ||||||||||| ||||||||||| ||||||| ||||| | ||||||| ||||||| ||||||| |||||| |||||| |
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| T |
35564910 |
tgaccacctgccttattcttatgaatgggta----gacggtgtgcatgattagttgcttagc-ttgcttggtgagttggttgaggacagcggaagcttcc |
35564816 |
T |
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| Q |
136 |
tcctttatctgttttggagtttagtagtgtcggcctctgattaggatatcgagtcttacttttgtcgttgctttatgatgagattattatctgactgttg |
235 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35564815 |
acctttatctgctttggagtttagtagtgtcg-------------atatcgagtcttacttttgtcgttgctttatgatgagattattatctgactgttg |
35564729 |
T |
|
| Q |
236 |
agatatttttatgttctgagccttgttatggcctttgagatttttactagatgtacttgatgatgagttaatgtcactgagatttttatgttgattgttg |
335 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
35564728 |
agatatttttatgttttgagccttgttatggcctttgagctttttactatatgtacttgaggatgacttaatgtcactgagatttttatgttgattgttg |
35564629 |
T |
|
| Q |
336 |
aaattttccactacgatgtttatgaaactgaatctttgcatgtttttgaaatgaatgatga |
396 |
Q |
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||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35564628 |
aaattttccgctgcgatgtttatgaaactgaatcgttgcatgtttttgaaatgaatgatga |
35564568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35564974 - 35564937
Alignment:
| Q |
1 |
ttattttcaattgattatgctttaattgatttgaatga |
38 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
35564974 |
ttattttcaattgattatgctttaattggtttgaatga |
35564937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 13603 - 13777
Alignment:
| Q |
1 |
ttattttcaattgattatgctttaattgatttgaatgaccgcctgccttattctcatgaatgggtacgttgacggtgtgcaagattagtagcttaacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||| |
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| T |
13603 |
ttattttcaattgattatgctttaattgatttgaatgaccgcctgccttattcttatgaatgggtacgtagacggtgtgcaggattagttgcttaacatt |
13702 |
T |
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| Q |
101 |
gcttgctgagttgtttgaggatagcggatgcttcctcctttatctgttttggagtttagtagtgtcggcctctga |
175 |
Q |
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| T |
13703 |
acttgctgagttgcttgatgatagcggaagcttcctcctttatctgttttggagtttagtagtgtcgacctctga |
13777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 282 - 402
Target Start/End: Original strand, 14564 - 14684
Alignment:
| Q |
282 |
ctagatgtacttgatgatgagttaatgtcactgagatttttatgttgattgttgaaattttccactacgatgtttatgaaactgaatctttgcatgtttt |
381 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||| |
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| T |
14564 |
ctagatgtacttgaggatgacttaatgtcactgagatttttatgttgattgttgaaattttccgctgcgatgtttatgaaactaaatctttgcatgtttt |
14663 |
T |
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| Q |
382 |
tgaaatgaatgatgatgtaac |
402 |
Q |
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||||||||||||||| ||||| |
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| T |
14664 |
tgaaatgaatgatgacgtaac |
14684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 107 - 396
Target Start/End: Complemental strand, 18032580 - 18032291
Alignment:
| Q |
107 |
tgagttgtttgaggatagcggatgcttcctcctttatctgttttggagtttagtagtgtcggcctctgattaggatatcgagtcttacttttgtcgttgc |
206 |
Q |
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||||||| |||||| |||| || ||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||||| ||||||||||| |
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| T |
18032580 |
tgagttgcttgagg-tagcagaagcttcctcctttatctgctttgaagtttagtagtgtcgggctctgattaggat--cgagtcttacatttgtcgttgc |
18032484 |
T |
|
| Q |
207 |
tttatgatgagattattatctgactgttgagatatt-tttatgttctgagccttgttatggcctttgagatttttactagatgtacttgatgatgagtta |
305 |
Q |
| |
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|||||| |||||||||||| ||||| |||||||||| ||||||| ||||| |||||||||||||||||||| ||||||||| |||| || || || | |
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| T |
18032483 |
tttatgttgagattattatttgactattgagatattacttatgttttgagctttgttatggcctttgagattgttactagatatactagaggacgactgt |
18032384 |
T |
|
| Q |
306 |
atgtcactgagatttttatgttgattgttgaa--attttccactacgatgtttatgaaactgaatctttgcatgtttttgaaatgaatgatga |
396 |
Q |
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|||||||| ||||||||||||||| | ||||| ||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||| |
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| T |
18032383 |
atgtcactaagatttttatgttgactattgaatttttttctgctacgatgtttatggaactgaatctttgcatgtctttaaaatgaatgatga |
18032291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 22447030 - 22446888
Alignment:
| Q |
100 |
tgcttgctgagttgtttgaggatagcggatgcttcctcctttatctgttttggagtttagtagtgtcggcctctgattaggatatcgagtcttacttttg |
199 |
Q |
| |
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|||||| ||||||||||||||||| ||| |||||||||||||| || ||||||||||||| ||||||| |||||| ||||| ||||||||||||||||| |
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| T |
22447030 |
tgcttggtgagttgtttgaggataaaggaagcttcctcctttatttgctttggagtttagtcgtgtcgggctctgactaggagatcgagtcttacttttg |
22446931 |
T |
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| Q |
200 |
tcgttgctttatgatgagattattatctgactgttgagatatt |
242 |
Q |
| |
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|||||| |||||| |||||||| |||| |||| |||||||||| |
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| T |
22446930 |
tcgttgatttatgttgagattactatccgactattgagatatt |
22446888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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