View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20185_high_8 (Length: 310)
Name: NF20185_high_8
Description: NF20185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20185_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 44692745 - 44692441
Alignment:
| Q |
1 |
cggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagcttccccatacataga |
100 |
Q |
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| T |
44692745 |
cggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagcttccccatacataga |
44692646 |
T |
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| Q |
101 |
tttaaccgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatgagtccacacatgcccctccaaatcctccaataaattatttaac |
200 |
Q |
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| T |
44692645 |
tttaactgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatgagtccacacatgcccctccaaatcctccaataaattatttaac |
44692546 |
T |
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| Q |
201 |
aattgttcctcccacacnnnnnnncgccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagagaata |
300 |
Q |
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| T |
44692545 |
aattgttcctcccacacaaaaaaacgccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagagaaca |
44692446 |
T |
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| Q |
301 |
atcta |
305 |
Q |
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||||| |
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| T |
44692445 |
atcta |
44692441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 34866451 - 34866639
Alignment:
| Q |
5 |
gccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagcttccccatacatagattta |
104 |
Q |
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| T |
34866451 |
gccgggcttttccaaagttggagaaacactctcaactcctccacactccaattgttctccacaatccatctcccttcaaactt-cgcatacatagatttc |
34866549 |
T |
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| Q |
105 |
accgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatgagtccacacatgcccctccaaatcctccaataaatta |
194 |
Q |
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| T |
34866550 |
accgtgaatttcccttcgtcttccatcctccacacccatctgtcttcaccgttagaccacacatgcccctccaaatcttccaataaatta |
34866639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 34866690 - 34866768
Alignment:
| Q |
227 |
ccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagagaataatcta |
305 |
Q |
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||||||||||| ||| || |||||||||| || | ||| |||| |||||||||||||| |||||||||||||||||| |
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| T |
34866690 |
ccactccaccatcggaccggtattcaccccaatctccgcaaccaatgcctctttttggttcgacatagagaataatcta |
34866768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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