View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20185_high_9 (Length: 250)
Name: NF20185_high_9
Description: NF20185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20185_high_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 35967199 - 35967431
Alignment:
| Q |
18 |
atgggtaaggaaaggatttaaaaagtatccatcaaccaagttcaagaaaacaacatagcgacacaaaatacatcacaaactaggtgacaaaaccgagata |
117 |
Q |
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||||||||||||| |||| ||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||| | |||||||| ||||||| |
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| T |
35967199 |
atgggtaaggaaatgattcaaaaaatatccatcaaccaagttcaagaaaacaagatagtgacacaaaatacatcacaaactggatgacaaaatcgagata |
35967298 |
T |
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| Q |
118 |
aattatgagattatgccaccaagaatgtacatgaaaagctaagtgtcaaatgtttcgctttccaccatcnnnnnnnnnnnnntctactggttagtaacta |
217 |
Q |
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|| |||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
35967299 |
aactatgagattatgccaccaagaatgtacatgaaaaaccaagtgtcagatgtttcgctttccaccatcaaaaactaaaaaatctactggttagtaacta |
35967398 |
T |
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| Q |
218 |
tcgaatatctgaatcaaagatccacatctcaaa |
250 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
35967399 |
tcgaatatctgaaacaaagatccacatctcaaa |
35967431 |
T |
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