View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20185_low_2 (Length: 545)
Name: NF20185_low_2
Description: NF20185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20185_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 35968051 - 35967514
Alignment:
| Q |
1 |
tggatcatggactctgtctgctcaacaacaacactgttccttgtgaatgacaacccaatcggtgaattcaaattgaaaaggggtttgagacaaggtgatc |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35968051 |
tggatcatggaccgtgtctgctcaacaacaacactgttccttgtgaatgacaacccaatcggtgaattcaaattgaaaaggggtttgagacaagatgatc |
35967952 |
T |
|
| Q |
101 |
ccctccctccttttcnnnnnnn--gattgttgcagaatggttgaataatatgttaaattctatcatagaggctagttaatttattgtttataaggttagt |
198 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35967951 |
ccctccctcctttactttttttttgattgttgcagaatggttgaataatatgttaaattctatcatagaggctagttaatttattgtttataaggttagt |
35967852 |
T |
|
| Q |
199 |
caatcaaaggatttgtgtatttctcatttacaatttgttgatgatactctgattgtta----taaaagttaggtgaatattagagctataaaagttaatt |
294 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35967851 |
caatcaaaggatatgtgtatttctcatttacaatttgttgatgatactctgattgttggacgtaaaagttgggtgaatattagagctataaaagttaatc |
35967752 |
T |
|
| Q |
295 |
ttattctctttgagataattttgagtttgaaggtgaactttcataagcgtttattgatgggtgtgaatgtggctggttcttgattggtagaggtctctgt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35967751 |
ttattctctttgagataattttgagtttgaaggtgaactttcataagcgtttattgatgggtgtgaatgtggctggttcttggttggtagaggtctctgt |
35967652 |
T |
|
| Q |
395 |
ggttcttaattgtaaatttggtcacgttgttttcttatatcatgacattgttgttggaggtgatcgccgtctgataagattttggtctcttgttttgcaa |
494 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
35967651 |
ggttcttaattgtaaatttggtcacattgttttcttatatcatgacattgttgttggaggtgattgccgtccgataagattttggtctcttgttttgcaa |
35967552 |
T |
|
| Q |
495 |
tggttaggaatctcttgacatttatgttgtgtctctct |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35967551 |
tggttaggaatctcttgacatttatgttgtgtctctct |
35967514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 249
Target Start/End: Complemental strand, 20796884 - 20796851
Alignment:
| Q |
216 |
tatttctcatttacaatttgttgatgatactctg |
249 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
20796884 |
tatttctcatttataatttgttgatgatactctg |
20796851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University