View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20185_low_4 (Length: 490)

Name: NF20185_low_4
Description: NF20185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20185_low_4
NF20185_low_4
[»] chr8 (4 HSPs)
chr8 (18-374)||(9174321-9174659)
chr8 (18-146)||(9710849-9710977)
chr8 (427-472)||(9174664-9174709)
chr8 (155-196)||(9178525-9178566)
[»] chr2 (3 HSPs)
chr2 (18-154)||(38618743-38618879)
chr2 (90-154)||(30491046-30491110)
chr2 (16-154)||(17313119-17313257)
[»] chr5 (7 HSPs)
chr5 (18-154)||(20236759-20236895)
chr5 (18-154)||(25760743-25760879)
chr5 (16-164)||(23352572-23352720)
chr5 (18-65)||(13851314-13851361)
chr5 (73-149)||(38679811-38679887)
chr5 (90-154)||(8301138-8301202)
chr5 (99-154)||(13851359-13851414)
[»] chr1 (5 HSPs)
chr1 (18-146)||(45911004-45911132)
chr1 (18-146)||(44713685-44713813)
chr1 (18-154)||(50514844-50514971)
chr1 (73-154)||(41723228-41723308)
chr1 (73-159)||(33801055-33801141)
[»] chr3 (3 HSPs)
chr3 (18-149)||(48094500-48094631)
chr3 (18-149)||(52973043-52973174)
chr3 (73-154)||(26502550-26502631)
[»] chr7 (3 HSPs)
chr7 (18-155)||(41257959-41258096)
chr7 (16-159)||(19215056-19215199)
chr7 (73-149)||(33950633-33950709)
[»] chr4 (2 HSPs)
chr4 (73-154)||(38218626-38218707)
chr4 (73-154)||(56464000-56464081)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 9174321 - 9174659
Alignment:
Q  18 atgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    ||||||||||||||| ||||||||||||||| ||||||| ||||    
T  9174321 atgaatcagggtgatttgctaaccatttcggattataggatccgatttttgtccgaattatacaatatgaacaaagggtattttggttaaaattacaagg 9174420  T
Q  118 cacgcgagaaggctgtaggatgggaaaagtaagagtccttttattatcctccattgtgtccttgcattgtcgttaaatgggatgatgtcaaccatgtgta 217  Q
    || |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9174421 catgcgagaaggctgtagggtggaaaaagtaagagtccttttattatcctccattgtgtccttgcattgtcgttaaatgggatgatgtcaaccatgtgtg 9174520  T
Q  218 ttatgctgtaataaagatgctagtacatgtaaagatgctagtacatgtacgtgtgttcctgagaaaatgaagttggataaccaccatatacgatactgtc 317  Q
    ||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9174521 ttatgctgtaataaagatgcta------------------gtacatgtacgtgtgttcctgagaaaatgaagttggataaccaccatatacgatactgtc 9174602  T
Q  318 taattgtctaaaactaatttgatacatgccacgtgttgtaacaccagcaaaatgatt 374  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9174603 taattgtctaaaactaatttgatacatgccacgtgtcgtaacaccagcaaaatgatt 9174659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 9710849 - 9710977
Alignment:
Q  18 atgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataagg 117  Q
    |||||| |||||||||||||||||||||||||||| ||||||| | | ||||   |||||||||||  | | |||||||||||||||||||||||||  |    
T  9710849 atgaattagggtgatttgctaaccatttcggattaaaggatccgaatgttgtccggattatacaatccggacaaagggtattttggtcaaaattatagag 9710948  T
Q  118 cacgcgagaaggctgtaggatgggaaaag 146  Q
    ||||||||||||||||||| |||||||||    
T  9710949 cacgcgagaaggctgtagggtgggaaaag 9710977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 9174664 - 9174709
Alignment:
Q  427 tcgacaaataggcgtggcaatcgagcaatagcctatatgcacaaat 472  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  9174664 tcgacaaataggcgtggtaatcgagcaatagcctatatgtacaaat 9174709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 9178525 - 9178566
Alignment:
Q  155 cttttattatcctccattgtgtccttgcattgtcgttaaatg 196  Q
    ||||| || |||||||||||||||||||||||||||| ||||    
T  9178525 cttttgttttcctccattgtgtccttgcattgtcgttgaatg 9178566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 38618879 - 38618743
Alignment:
Q  18 atgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataagg 117  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||| |   ||||||||||| || | ||||||||||||||||||||| | | ||    
T  38618879 atgaatcagggtgatttgctaaccatttcggattattggatccgatttttattcggattatacaatctggacaaagggtattttggtcaaaatcacaggg 38618780  T
Q  118 cacgcgagaaggctgtaggatgggaaaagtaagagtc 154  Q
    | ||||||||||||||||| |||||||||||| ||||    
T  38618779 cgcgcgagaaggctgtagggtgggaaaagtaatagtc 38618743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 30491046 - 30491110
Alignment:
Q  90 aaagggtattttggtcaaaattataaggcacgcgagaaggctgtaggatgggaaaagtaagagtc 154  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||||| ||||    
T  30491046 aaagggtattttggtcaaaatcacaaggcgcgcgagaaggctgtagggtgggaaaagtaatagtc 30491110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 17313119 - 17313257
Alignment:
Q  16 agatgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataa 115  Q
    |||||||||| ||||||||| ||| |||||| ||||||||||||| | || |||   |||||||||||    | |||||||||||| |||||||| | |     
T  17313119 agatgaatcaaggtgatttgataatcatttcagattataggatccgaattctgttcggattatacaatccagacaaagggtattttagtcaaaatcacag 17313218  T
Q  116 ggcacgcgagaaggctgtaggatgggaaaagtaagagtc 154  Q
    ||| |||||||||||  |||| |||||||||||| ||||    
T  17313219 ggcgcgcgagaaggcgatagggtgggaaaagtaacagtc 17313257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 20236759 - 20236895
Alignment:
Q  18 atgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataagg 117  Q
    ||||||||| ||||||||||||||||||| ||||||||||||  ||||||||   ||||||||||| |||| |||||| |||||||||||||| | | ||    
T  20236759 atgaatcagtgtgatttgctaaccatttcagattataggatcagatttttgtccagattatacaatctgaacaaagggaattttggtcaaaatcacaggg 20236858  T
Q  118 cacgcgagaaggctgtaggatgggaaaagtaagagtc 154  Q
    |||||||||||| |||||| |||||||||||| ||||    
T  20236859 cacgcgagaaggttgtagggtgggaaaagtaatagtc 20236895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 25760879 - 25760743
Alignment:
Q  18 atgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataagg 117  Q
    |||||||||||| ||||||||||||||| |||||||||||||| ||||||||   |||||||||||  | | | ||||||||||||||||||| ||| ||    
T  25760879 atgaatcagggttatttgctaaccattttggattataggatccgatttttgtccagattatacaattcggacatagggtattttggtcaaaatcataggg 25760780  T
Q  118 cacgcgagaaggctgtaggatgggaaaagtaagagtc 154  Q
    | |||||||||| |||| | ||| |||||||| ||||    
T  25760779 cgcgcgagaaggttgtaaggtggaaaaagtaatagtc 25760743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 23352572 - 23352720
Alignment:
Q  16 agatgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataa 115  Q
    |||||||||||||||||||| | | |||||||||| |||||||| || || |||   |||| ||  ||  ||| |||||||||||| |||||||| | |     
T  23352572 agatgaatcagggtgatttgatgatcatttcggatgataggatctaaattctgtccggattgtattatccgaacaaagggtattttagtcaaaatcacag 23352671  T
Q  116 ggcacgcgagaaggctgtaggatgggaaaagtaagagtccttttattat 164  Q
    |||  |||||||||||||||| |||||||||||| |||| | |||||||    
T  23352672 ggcgtgcgagaaggctgtagggtgggaaaagtaacagtcttattattat 23352720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 13851314 - 13851361
Alignment:
Q  18 atgaatcagggtgatttgctaaccatttcggattataggatccaattt 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  13851314 atgaatcagagtgatttgctaaccatttcggattataggatccgattt 13851361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 38679811 - 38679887
Alignment:
Q  73 gattatacaatatgaataaagggtattttggtcaaaattataaggcacgcgagaaggctgtaggatgggaaaagtaa 149  Q
    |||||||||||  | | ||||||||||||||||||||| ||| ||| |||||||| |||||||| ||| ||||||||    
T  38679811 gattatacaatcgggacaaagggtattttggtcaaaatcatagggcgcgcgagaaagctgtagggtggaaaaagtaa 38679887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 8301138 - 8301202
Alignment:
Q  90 aaagggtattttggtcaaaattataaggcacgcgagaaggctgtaggatgggaaaagtaagagtc 154  Q
    ||||||||||||||||||||| | | |||  || ||||||||||||| |||||||||||| ||||    
T  8301138 aaagggtattttggtcaaaatcacagggcgtgcaagaaggctgtagggtgggaaaagtaatagtc 8301202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 13851359 - 13851414
Alignment:
Q  99 tttggtcaaaattataaggcacgcgagaaggctgtaggatgggaaaagtaagagtc 154  Q
    |||||||||||| | |||||||||||||||||| |||| ||| |||||||| ||||    
T  13851359 tttggtcaaaatcacaaggcacgcgagaaggctatagggtggaaaaagtaatagtc 13851414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 45911004 - 45911132
Alignment:
Q  18 atgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataagg 117  Q
    |||||||| | |||||||||||||||||||||||||||||||| ||||||||   |||||||||||  | | ||||||||||||||||||||| | | ||    
T  45911004 atgaatcaagatgatttgctaaccatttcggattataggatccgatttttgtccggattatacaatccggacaaagggtattttggtcaaaatcacatgg 45911103  T
Q  118 cacgcgagaaggctgtaggatgggaaaag 146  Q
    | ||||||||||||||||| |||||||||    
T  45911104 cgcgcgagaaggctgtagggtgggaaaag 45911132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 44713685 - 44713813
Alignment:
Q  18 atgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataagg 117  Q
    |||||||||||| |||||||| |||||| |||||||||||||| ||||||||   |||||||||||  | | ||||||||||||||||||||||| | |     
T  44713685 atgaatcagggtaatttgctagccattttggattataggatccgatttttgtccggattatacaatccggacaaagggtattttggtcaaaattacagga 44713784  T
Q  118 cacgcgagaaggctgtaggatgggaaaag 146  Q
    | ||||||||||||||||| |||||||||    
T  44713785 cgcgcgagaaggctgtagggtgggaaaag 44713813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 50514971 - 50514844
Alignment:
Q  18 atgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataagg 117  Q
    |||||| || ||||||||||||||||||||||||||||||||| |||| |||   || |||||         ||| ||||||||||||||||| | | ||    
T  50514971 atgaattagagtgatttgctaaccatttcggattataggatccgatttctgtccggaatatac---------aaaaggtattttggtcaaaatcacaggg 50514881  T
Q  118 cacgcgagaaggctgtaggatgggaaaagtaagagtc 154  Q
    |  |||||||||||||||| |||||||||||| ||||    
T  50514880 cgggcgagaaggctgtagggtgggaaaagtaatagtc 50514844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 41723308 - 41723228
Alignment:
Q  73 gattatacaatatgaataaagggtattttggtcaaaattataaggcacgcgagaaggctgtaggatgggaaaagtaagagtc 154  Q
    |||||||||||  | | || |||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||| ||||    
T  41723308 gattatacaatccggacaaggggtattttggtcaaaatcataaggcgcgcgagaaggctgtagggt-ggaaaagtaatagtc 41723228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 33801141 - 33801055
Alignment:
Q  73 gattatacaatatgaataaagggtattttggtcaaaattataaggcacgcgagaaggctgtaggatgggaaaagtaagagtcctttt 159  Q
    |||||||||||  | | ||||||||||||||||||||| | | | | ||||||||||| ||||| |||||||||||| |||| ||||    
T  33801141 gattatacaatccggacaaagggtattttggtcaaaatcacaggacgcgcgagaaggcagtagggtgggaaaagtaatagtcttttt 33801055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 48094631 - 48094500
Alignment:
Q  18 atgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||   |||||||||||  | | |||| |||||||||||||||| ||| ||    
T  48094631 atgaatcagggtgatttgctaaccatttcggattataggatccgttttttgtccggattatacaatccggacaaagagtattttggtcaaaatcataggg 48094532  T
Q  118 cacgcgagaaggctgtaggatgggaaaagtaa 149  Q
    | | |||||||| |||||| ||| ||||||||    
T  48094531 cgctcgagaaggttgtagggtggaaaaagtaa 48094500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 52973043 - 52973174
Alignment:
Q  18 atgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataagg 117  Q
    |||||||| |||||||| ||||||||||||||||||||||||| ||||||||   |||||||||||  ||   |||||||||||||||||||| | | ||    
T  52973043 atgaatcaaggtgattttctaaccatttcggattataggatccgatttttgtccggattatacaatccgaccgaagggtattttggtcaaaatcacaggg 52973142  T
Q  118 cacgcgagaaggctgtaggatgggaaaagtaa 149  Q
    | |||||||||||  |||| ||| ||||||||    
T  52973143 cgcgcgagaaggcgatagggtggaaaaagtaa 52973174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 26502550 - 26502631
Alignment:
Q  73 gattatacaatatgaataaagggtattttggtcaaaattataaggcacgcgagaaggctgtaggatgggaaaagtaagagtc 154  Q
    ||||||||||| || | ||||||||||||||||||||| ||| ||| || |||||||||||||| |||||||||||| ||||    
T  26502550 gattatacaatctggacaaagggtattttggtcaaaatcatagggcgcgtgagaaggctgtagggtgggaaaagtaatagtc 26502631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 41257959 - 41258096
Alignment:
Q  18 atgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataagg 117  Q
    ||||||||  ||||||||||||||||||||||||||||||||| ||||||||    |||||| |||    | ||||||||||||||||||||| | | ||    
T  41257959 atgaatcaatgtgatttgctaaccatttcggattataggatccgatttttgtccgaattatataatccagacaaagggtattttggtcaaaatcacaggg 41258058  T
Q  118 cacgcgagaaggctgtaggatgggaaaagtaagagtcc 155  Q
    | ||||||||||||||||| |||||||||||| |||||    
T  41258059 cgcgcgagaaggctgtagggtgggaaaagtaatagtcc 41258096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 19215199 - 19215056
Alignment:
Q  16 agatgaatcagggtgatttgctaaccatttcggattataggatccaatttttgtgttgattatacaatatgaataaagggtattttggtcaaaattataa 115  Q
    |||||||||||||||||||| | | | |||||||||||||||||| | || |||   |||| ||  ||    ||||||||||||||||||||||| | |     
T  19215199 agatgaatcagggtgatttgatgatcgtttcggattataggatccgaattctgtccggattgtattatccagataaagggtattttggtcaaaatcacag 19215100  T
Q  116 ggcacgcgagaaggctgtaggatgggaaaagtaagagtcctttt 159  Q
    ||| || ||||||||||||||||||||||||||| |||| ||||    
T  19215099 ggcgcgtgagaaggctgtaggatgggaaaagtaacagtcttttt 19215056  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 33950709 - 33950633
Alignment:
Q  73 gattatacaatatgaataaagggtattttggtcaaaattataaggcacgcgagaaggctgtaggatgggaaaagtaa 149  Q
    |||||||||||  | | ||| ||||||||||||||||| | | ||| ||||||||||||||||  ||||||||||||    
T  33950709 gattatacaatccggacaaaaggtattttggtcaaaatcacagggcgcgcgagaaggctgtagagtgggaaaagtaa 33950633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 38218626 - 38218707
Alignment:
Q  73 gattatacaatatgaataaagggtattttggtcaaaattataaggcacgcgagaaggctgtaggatgggaaaagtaagagtc 154  Q
    |||||||||||  ||| ||||||||||||||||||||| ||| ||| ||||||||||||||||| |||||||||||| ||||    
T  38218626 gattatacaatccgaacaaagggtattttggtcaaaatcatagggcgcgcgagaaggctgtagggtgggaaaagtaatagtc 38218707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 56464000 - 56464081
Alignment:
Q  73 gattatacaatatgaataaagggtattttggtcaaaattataaggcacgcgagaaggctgtaggatgggaaaagtaagagtc 154  Q
    |||||||||||  | | ||||||||||||||||||||| | | ||| | ||||||||||||||| |||||||| ||| ||||    
T  56464000 gattatacaatccggacaaagggtattttggtcaaaatcacagggcgcacgagaaggctgtagggtgggaaaaataatagtc 56464081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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