View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20185_low_5 (Length: 473)
Name: NF20185_low_5
Description: NF20185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20185_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 42449910 - 42450381
Alignment:
| Q |
1 |
tcaccaactgattttcatcatcaaatagttgctcagcaagagccttagcaagttctgttttaccaacaccagttggaccaaggaataggaaggaaccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42449910 |
tcaccaactgattttcatcatcaaatagttgctcagcaagagccttagcaagttctgttttaccaacaccagttggaccaaggaataggaaggaaccaat |
42450009 |
T |
|
| Q |
101 |
tggatgttgaggtcttcctaaaccaactctccacctcaatacagcattagcaacggcatttactgcatgatcttgtcccactactcttttgtgtaacctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42450010 |
tggatgttgaggtcttcctaaaccaactctccgcctcaatacagtgttagcaacggcatttactgcatgatcttgtcccactactcttttgtgtaacctg |
42450109 |
T |
|
| Q |
201 |
tcaccaagtccaagaaacatttctttctcattttcgccaagtcgggacactggtatacccgtcaataggctaacaaccaaagctattaggtctgg----- |
295 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42450110 |
tcaccaagtccaagaaacctttctttctcattttcactaagtcgggacactggtatacccgtcaataggctaacaaccaaacctattaggtctggttcaa |
42450209 |
T |
|
| Q |
296 |
----ttttgtcaacatcaagctcttatcggtgctatcttcaagtcgttgaattgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctct |
391 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42450210 |
cagtttttgtcaacatcaagcttttatcggtgctatcttcaagtcgttgaattgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctct |
42450309 |
T |
|
| Q |
392 |
tgctatatcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgcttcagcctttg |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42450310 |
tgctatatcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgcttcagcctttg |
42450381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 742654 - 743133
Alignment:
| Q |
1 |
tcaccaactgattttcatcatcaaatagttgctcagcaagagccttagcaagttctgttttaccaacaccagttggaccaaggaataggaaggaaccaat |
100 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
742654 |
tcaccaactggttttcatcatcaaagagttgttcagcaagagctttagcaagttctgttttaccaacaccagttggaccaaggaataggaaggaaccaat |
742753 |
T |
|
| Q |
101 |
tggatgttgaggtcttcctaaaccaactctccacctcaatacagcattagcaacggcatttactgcatgatcttgtcccactactcttttgtgtaacctg |
200 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| |||||||| ||||||||| |||||||||| |||||||||||||| ||||| || || |||||| |
|
|
| T |
742754 |
tggatgttgaggtcttcctgaaccagctctccaccttaatacagcgttagcaacgtcatttactgcttgatcttgtcccacaactctattatgcaacctg |
742853 |
T |
|
| Q |
201 |
tcaccaagtccaagaaacatttctttctcattttcgccaagtcgggacactggtatacccgtcaataggctaacaaccaaagctattaggt--------- |
291 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||| | ||| ||||||||| || ||||||||||||||||||| ||| ||||||| |
|
|
| T |
742854 |
tcaccaattccaagaaacctttctttctcattttcgccaatttgggtcactggtatgccggtcaataggctaacaaccatagcaattaggttttgtactc |
742953 |
T |
|
| Q |
292 |
--------ctggttttgtcaacatcaagctcttatcggtgctatcttcaagtcgttgaattgcatcttccacatcatcaatcgcaccatatcgtaggctt |
383 |
Q |
| |
|
| | || ||||||||| ||||||| ||| ||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
742954 |
cagcacagcagtttctgtcaacattaagctctcatcagtgctatctccaagcagctgaattgcatcttccacgtcatcaatcgcaccatatcgtagactt |
743053 |
T |
|
| Q |
384 |
gcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgcttcagcctttg |
463 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| |
|
|
| T |
743054 |
gcagctctttctatatcatgccgcctctcagcctcctgtagagacaagataagctcttcgcttttcagcttcagcctttg |
743133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 45467977 - 45467700
Alignment:
| Q |
1 |
tcaccaactgattttcatcatcaaatagttgctcagcaagagccttagcaagttctgttttaccaacaccagttggaccaaggaataggaaggaaccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||| |||||||||| | |
|
|
| T |
45467977 |
tcaccaactgattttcatcatcaaatagctgctctgcaagagcctttgcaagctcagttttaccaacaccagtcggaccaaggaataagaaggaaccagt |
45467878 |
T |
|
| Q |
101 |
tggatgttgaggtcttcctaaaccaactctccacctcaatacagcattagcaacggcatttactgcatgatcttgtcccactactcttttgtgtaacctg |
200 |
Q |
| |
|
||| ||||| ||||||||||||||| |||| | ||||||||||| | |||||| ||||| || || || ||||||||||| ||||| |||| | ||| |
|
|
| T |
45467877 |
tggttgttggggtcttcctaaaccagctcttgatctcaatacagcctcagcaacagcattaaccgcttggtcttgtcccacgactctagtgtgcagtctg |
45467778 |
T |
|
| Q |
201 |
tcaccaagtccaagaaacatttctttctcattttcgccaagtcgggacactggtatacccgtcaataggctaacaacc |
278 |
Q |
| |
|
||||||||||||| ||| || |||||||||||| ||| || | | |||||||||||| ||| || ||||||||||| |
|
|
| T |
45467777 |
tcaccaagtccaaccaaccttgctttctcattttggccgagcctagtcactggtataccagtccatcggctaacaacc |
45467700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 341 - 461
Target Start/End: Complemental strand, 45467616 - 45467496
Alignment:
| Q |
341 |
aattgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctct |
440 |
Q |
| |
|
||||||| |||||| || ||||| ||||||||||| ||| ||||||||||||| ||||| ||||||||| ||||||||||| | |||| |||||| |
|
|
| T |
45467616 |
aattgcagtttccacctcttcaattgcaccatatcgcaggtccgcagctcttgctagatcataccgcctctctgcctcctgtagtgcaaagaggagctct |
45467517 |
T |
|
| Q |
441 |
tcacgtttctgcttcagcctt |
461 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45467516 |
tcacgtttctgcttcagcctt |
45467496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 278
Target Start/End: Complemental strand, 10046122 - 10045847
Alignment:
| Q |
3 |
accaactgattttcatcatcaaatagttgctcagcaagagccttagcaagttctgttttaccaacaccagttggaccaaggaataggaaggaaccaattg |
102 |
Q |
| |
|
|||| ||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10046122 |
accatctgattttcattatcaaagagttgttgagcaagagccttagcaagttctgttttaccgacaccagttggaccaaggaataggaaggaaccagttg |
10046023 |
T |
|
| Q |
103 |
gatgttgaggtcttcctaaaccaactctccacctcaatacagcattagcaacggcatttactgcatgatcttgtcccactactcttttgtgtaacctgtc |
202 |
Q |
| |
|
| ||||| |||||||||| |||| ||||| |||| | |||||| ||| || || || ||||| || ||||||||||| ||||| | || || ||||| |
|
|
| T |
10046022 |
gttgttgtggtcttcctagaccagctctcgaccttactacagccccagcgacagctttaactgcttggtcttgtcccacaactctagtatgcaatctgtc |
10045923 |
T |
|
| Q |
203 |
accaagtccaagaaacatttctttctcattttcgccaagtcgggacactggtatacccgtcaataggctaacaacc |
278 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||| ||| | || | |||||||||||| ||| || ||||||||||| |
|
|
| T |
10045922 |
tccaagtccaaccaacctttctttatcattttggcctaaacgagtcactggtataccggtccatcggctaacaacc |
10045847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 38707908 - 38707683
Alignment:
| Q |
9 |
tgattttcatcatcaaatagttgctcagcaagagccttagcaagttctgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgtt |
108 |
Q |
| |
|
|||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| |||| | || |
|
|
| T |
38707908 |
tgattttcatcagcaaagagttattgagcaagagccttagcaagttctgttttaccaacactatttggaccaaggaataggaagggaccagttggttttt |
38707809 |
T |
|
| Q |
109 |
gaggtcttcctaaaccaactctccacctcaatacagcattagcaacggcatttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaag |
208 |
Q |
| |
|
||||||||| ||||||||||||| | |||| |||||| ||||| | || ||||| || ||||||||||| ||||| |||| || |||||||||| |
|
|
| T |
38707808 |
gaggtcttcttaaaccaactctcgatctcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaag |
38707709 |
T |
|
| Q |
209 |
tccaagaaacatttctttctcatttt |
234 |
Q |
| |
|
||||| ||| ||||||| ||||||| |
|
|
| T |
38707708 |
tccaaccaacctttctttatcatttt |
38707683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 342 - 457
Target Start/End: Complemental strand, 10045762 - 10045647
Alignment:
| Q |
342 |
attgcatcttccacatcatcaatcgcaccatatcgtaggcttgcagctcttgctatatcattccgcctctcagcctcctgtagagacaagataagctctt |
441 |
Q |
| |
|
||||||| |||||| || ||||| ||||||||||||||| ||||||||| |||| ||||| ||||||||||||||| ||||| | |||| ||||||| |
|
|
| T |
10045762 |
attgcattttccacctcttcaattgcaccatatcgtaggtctgcagctctggctagatcataccgcctctcagcctcttgtagtgcaaagaggagctctt |
10045663 |
T |
|
| Q |
442 |
cacgtttctgcttcag |
457 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
10045662 |
cacgtttctgtttcag |
10045647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 43064693 - 43064828
Alignment:
| Q |
10 |
gattttcatcatcaaatagttgctcagcaagagccttagcaagttctgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttg |
109 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||| | |||||||| ||||||||||||||| ||||||||||||||||||||| || |||| ||||| |
|
|
| T |
43064693 |
gattttcatcatcaagaagttgttctgcaagagccattgcaagttcagttttaccaacaccaattggaccaaggaataggaagggacatgttggttgttg |
43064792 |
T |
|
| Q |
110 |
aggtcttcctaaaccaactctccacctcaatacagc |
145 |
Q |
| |
|
|| ||||||||||||| |||| | ||||||||||| |
|
|
| T |
43064793 |
agctcttcctaaaccagctcttgatctcaatacagc |
43064828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 43065163 - 43065032
Alignment:
| Q |
1 |
tcaccaactgattttcatcatcaaatagttgctcagcaagagccttagcaagttctgttttaccaacaccagttggaccaaggaataggaagga--acca |
98 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| || |||||||||| |||||| | |||||||||||||||||||||| |||||| | |||||| ||| |
|
|
| T |
43065163 |
tcactaaccgattttcatcatcaaaaagttgttccacaagagcctttgcaagtccagttttaccaacaccagttggacaaaggaacatgaaggaacacct |
43065064 |
T |
|
| Q |
99 |
attggatgttgaggtcttcctaaaccaactct |
130 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| |
|
|
| T |
43065063 |
tttggatgttgagctcttcctaaaccagctct |
43065032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University