View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20185_low_8 (Length: 349)
Name: NF20185_low_8
Description: NF20185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20185_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 335
Target Start/End: Original strand, 21987440 - 21987759
Alignment:
| Q |
16 |
ataggatttcacaagactttgatggacttttcagtgattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcattttttatt |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21987440 |
ataggatttcacaagactttgatgaacttttcagggattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcattttttatt |
21987539 |
T |
|
| Q |
116 |
tcttttataattttacatctcccttatctcctttcccattctcgaatgtatctgtatctctgtatgtttcttatgtatcttcatctcttccattttaaca |
215 |
Q |
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|
||||||||| ||||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21987540 |
tcttttatatttttacatcgaccttatctccttcccctttatcgaatgtatctgtatctctgtatgtttcttatgtatcttcatctcttccattttaaca |
21987639 |
T |
|
| Q |
216 |
ttccattttcacattttgctataccacgcatatttctcttgctgcaaaaaacaaaatgtgatagacaaactctcaagctataacttctgacactttgata |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
21987640 |
tttcattttcacattttgctataccacgcatatttctcttgctgcaaaaaacaaaatgtgatagacaaactctcaaactataacttccgacactttgata |
21987739 |
T |
|
| Q |
316 |
acactgtctcatgcatgcca |
335 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
21987740 |
acactgtctcatgcatgcca |
21987759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 9840886 - 9840579
Alignment:
| Q |
16 |
ataggatttcacaagactttgatggacttttcagtgattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcatttttt-at |
114 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9840886 |
ataggatttcacaagactttgatggacttttcagtgattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcatttttttat |
9840787 |
T |
|
| Q |
115 |
ttcttttataattttacatctcccttatctcctttcccattctcgaatgtatctgtatctctgtatgtttcttatgtatcttcatctcttccattttaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9840786 |
ttcttttataattttacatctcccttatcttctttcccattctcgaatgtatctgtatctctgtatgtttcttatgtatcttcatctcttcca------- |
9840694 |
T |
|
| Q |
215 |
attccattttcacattttgctataccacgcatatttctcttgctgcaaaaaacaaaatgtgatagacaaactctcaagctataacttctgacactttgat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9840693 |
------ttttcacattttgctataccacgcatatttctcttgctgcaaaaaacaaaatgtgatagacaaactctcaagctataacttctgacactttgat |
9840600 |
T |
|
| Q |
315 |
aacactgtctcatgcatgcca |
335 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
9840599 |
aacactgtctcatgcatgcca |
9840579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 8636534 - 8636311
Alignment:
| Q |
20 |
gatttcacaagactttgatggacttttcagtgattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcattttttatttctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8636534 |
gatttcacaagactttgatggacttttcagtgattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcattttttatttctt |
8636435 |
T |
|
| Q |
120 |
ttataattttacatctcccttatctcctttcccattctcgaatgtatctgtatctctgtatgtttcttatgtatcttcatctcttccattttaacattcc |
219 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
8636434 |
ttatatttttacatctcccttatctccttcccctttctcaaatgtatctgtatctctgtatgtttcttacgtatcttcatctcttccattttaacattcc |
8636335 |
T |
|
| Q |
220 |
attttcacattttgctataccacg |
243 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
8636334 |
attttcacattttgctataccacg |
8636311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 10200858 - 10200797
Alignment:
| Q |
48 |
agtgattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcattt |
109 |
Q |
| |
|
|||||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||| |
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|
| T |
10200858 |
agtgattttttacctttaaaaagtctttcctcacatcatgagatttcaatggattctcattt |
10200797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 268
Target Start/End: Complemental strand, 8635266 - 8635235
Alignment:
| Q |
237 |
taccacgcatatttctcttgctgcaaaaaaca |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
8635266 |
taccacgcatatttctcttgctgcaaaaaaca |
8635235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 45135013 - 45135138
Alignment:
| Q |
33 |
tttgatggacttttcagtgattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcattttttatttcttttataattttaca |
132 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||| | ||||||| |
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|
| T |
45135013 |
tttgatggacttttcagtaattttttaactttaaaaagtctttaccaacatcatgaaatttctatggattttcattttttatttcatttttgtttttaca |
45135112 |
T |
|
| Q |
133 |
tctcccttatctcctttcccattctc |
158 |
Q |
| |
|
|||||||||||||||| ||| ||||| |
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|
| T |
45135113 |
tctcccttatctccttcccctttctc |
45135138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 28146063 - 28145955
Alignment:
| Q |
51 |
gattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcatt-ttttatttcttttataattttacatctcccttatctccttt |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
28146063 |
gattttttagctttaaaaagtctttaccaacatcatgagatttctatggattctcatttttttatttcttttttgtttttacatctcccttatctccttc |
28145964 |
T |
|
| Q |
150 |
cccattctc |
158 |
Q |
| |
|
||| ||||| |
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|
| T |
28145963 |
ccctttctc |
28145955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 54322857 - 54322958
Alignment:
| Q |
217 |
tccattttcacattttgctataccacgcatatttctcttgctg-caaaaaacaaaatgtgatagacaaactctcaagctataac-ttctgacactttgat |
314 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||||||||||| || |||||||||||| ||||||| ||||||| ||||| |||| | ||||||||||||| |
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|
| T |
54322857 |
tccattttcgcattttgctctaccacacatatttctcttggtgccaaaaaacaaaacgtgatagccaaactcccaagcattaacatcctgacactttgat |
54322956 |
T |
|
| Q |
315 |
aa |
316 |
Q |
| |
|
|| |
|
|
| T |
54322957 |
aa |
54322958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 45135174 - 45135274
Alignment:
| Q |
235 |
tataccacgcatatttctcttgctgcaaaaaacaaaatgtgatagacaaactctcaagctataac-ttctgacactttgataacactgtctcatgcatgc |
333 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||||||||||||| ||||||| || | ||||| |||||||||||| |||| | ||||| || ||||| |
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|
| T |
45135174 |
tataccattcatatttctctcgctgcaaaacacaaaatgtgatagccaaactcccacacaataactttctgacacttttataataatgtctaatccatgc |
45135273 |
T |
|
| Q |
334 |
c |
334 |
Q |
| |
|
| |
|
|
| T |
45135274 |
c |
45135274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 51287661 - 51287713
Alignment:
| Q |
85 |
atgagatttctatggattctcat-tttttatttcttttataattttacatctc |
136 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| ||||||||||| |
|
|
| T |
51287661 |
atgagatttctatggattctcataatcttatttcttttatgcttttacatctc |
51287713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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