View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20185_low_9 (Length: 347)
Name: NF20185_low_9
Description: NF20185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20185_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 49278540 - 49278282
Alignment:
| Q |
20 |
catatggcatgtatgtcactcatccactattttaggattttccatatttttctccacacctccctgatatcctcctccgctcaaagatttggcttgtttt |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49278540 |
catatggcatgtatgtcactcatacactattttaggattttccatatttttctccccacctccctgatatcctcc---gctcaaagatttggcttgttt- |
49278445 |
T |
|
| Q |
120 |
cattcttgataaattcgggacaaactttgtcgctgtgtttagcatggctctacacgaaaatattatactaattgttacacgtgtgcaaaggacatgactc |
219 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49278444 |
cattcttgataaattcgggataaacttcgtcgctgtgtttagcatggctctacacgaaaatattatactaattgttacacgtgtgcaaaggacatgactc |
49278345 |
T |
|
| Q |
220 |
ggaatgggtttgatgaatcaacattaaaacaagtattcaattaattttgacagggactgaaac |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49278344 |
ggaatgggtttgatgaatcaacattaaaacaagtattcaattaattttgacagggactaaaac |
49278282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 49278300 - 49278250
Alignment:
| Q |
283 |
ttttgacagggactgaaacaaaagaggaagaaaacattttgtcttcatctc |
333 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49278300 |
ttttgacagggactaaaacaaaagagaaagaaaacattttgtcttcatctc |
49278250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 862090 - 862026
Alignment:
| Q |
18 |
cacatatggcatgtatgtcactcatccactattttaggattttccatatttttctccacacctccc |
83 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| || ||||||| ||||||||| |||||||| |
|
|
| T |
862090 |
cacatgtggcatgtatgtcactcatccactagtttatga-tttccatctttttctccccacctccc |
862026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 47651238 - 47651183
Alignment:
| Q |
18 |
cacatatggcatgtatgtcactcatccactattttaggattttccatatttttctcc |
74 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
47651238 |
cacatgtggcatgtatgtcatccatccactattttatgatttt-catctttttctcc |
47651183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 7938456 - 7938520
Alignment:
| Q |
19 |
acatatggcatgtatgtcactcatccactattttaggattttccatatttttctccacacctccc |
83 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7938456 |
acatgtggcatgtatgccactcatccactattttaggattttccatatttttctcccaacctccc |
7938520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 52329247 - 52329193
Alignment:
| Q |
19 |
acatatggcatgtatgtcactcatccactattttaggattttccatatttttctc |
73 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52329247 |
acatgtggcatgtatgctactcatccactattttaggattttccatatttttctc |
52329193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 31416027 - 31415992
Alignment:
| Q |
44 |
cactattttaggattttccatatttttctccacacc |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31416027 |
cactattttaggattttccatatttttctccccacc |
31415992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University