View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20186_high_11 (Length: 379)
Name: NF20186_high_11
Description: NF20186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20186_high_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 40182483 - 40182855
Alignment:
| Q |
11 |
aagaatataagcaagctgaaactgaaccaagtgaatttcaatttccaaacactgatcaaagtaaataaaatcttttcaaccactccatgctttcttgcat |
110 |
Q |
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| T |
40182483 |
aagaatataagcaagctgaaactgaaccaagtgaatttcaatttccaaacactgatcaaagtaaataaaatattttcaaccactccatgctttcttgcat |
40182582 |
T |
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| Q |
111 |
ggttcatcctcaattatcttcattcagcaacatgataaatatgtaaacttttcatattacagcattgttgtcctgcaaagttgatataagtggaccattg |
210 |
Q |
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| T |
40182583 |
ggttcatcctcaattatcttcattcagcaacatgataaatatgtaaacttttcatattacagcattgttgtcctgcaaagttgatataagtggaccattg |
40182682 |
T |
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| Q |
211 |
taaaagcaaacataacaaaagaaagatgattctccacatgataaagtggtaaacaacaaaagccaaaaacacaatccttggaccttgacaggaaaatatg |
310 |
Q |
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| T |
40182683 |
taaaagcaaacataacaaaagaaagatgattctccacatgataaagtggtaaacaacaaaagccaaaaacacaatccttggaccttgacaggaaaatatg |
40182782 |
T |
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| Q |
311 |
tcatggaat----attagaatttaaatctctagaaagatgcaactagaaagtgagaagaattatgatgatgat |
379 |
Q |
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| T |
40182783 |
tcatggaatattaattagaatttaaatctctagaaagatgcaactagaaagtgagaagaattatgatgatgat |
40182855 |
T |
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