View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20186_high_2 (Length: 626)
Name: NF20186_high_2
Description: NF20186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20186_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 180 - 612
Target Start/End: Original strand, 11288593 - 11289041
Alignment:
| Q |
180 |
tatgataagacatgacaatagaataagagaaacagtttttggcaaatggtttatttggtgttagtatttcctaaactatctttctctttctct------c |
273 |
Q |
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| T |
11288593 |
tatgataagacatgacaagagaataagagaaacagtttttggcaaatggtttatttggtgttagtatttcctaaactatctttctctttctctttctctc |
11288692 |
T |
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| Q |
274 |
tcttgtatgcagcaaaaggatacagttgtacagcggtcagcaaggcataccaacaggcaacagtactgttaacaccccannnnnnnnnnnnnnntcatga |
373 |
Q |
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| T |
11288693 |
tcttgtatgcaacaaaaagatacagttgtacagcggtcagcaaggcataccaacaggcaacagtactggtaacaccccatctctctctctct--tcatga |
11288790 |
T |
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| Q |
374 |
aatcatgctttttgaaattcaactttgattcttaggatatgtgtgatgcatgcatgcatggatgccatgtgaagatacatgcatgaaataatcatacatg |
473 |
Q |
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| T |
11288791 |
aatcatgctttttgaaattcaactttgattcttaggatatgtatgatgcatgcatgcatggatgccatgtgaagatacatgcatgaaataatcatacatg |
11288890 |
T |
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| Q |
474 |
atactaatataatatgatgattta------------aaggataaaagagaaaaacgtgattttgttagtgtgttagtacaaacgtaaccccatttggttg |
561 |
Q |
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| T |
11288891 |
atactaatataatatgatgatttaatatgccaaaccaaggataaaagagaaaaacgtgactttgttagtgtgttagtacaaacgtaaccccatttggttg |
11288990 |
T |
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| Q |
562 |
cttggtttcatcatgtttgcatggtatatactatatacgattattattcat |
612 |
Q |
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| T |
11288991 |
cttggtttcatcatgtttgcatggtatatactatatacgattattattcat |
11289041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 11288479 - 11288566
Alignment:
| Q |
50 |
caattgattcaaaatcaaatattttaacacaaacatgcacacaaaatattttgtgacaaaagtaaaacggtattattgcaattataaa |
137 |
Q |
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| T |
11288479 |
caattgattcaaaatcaaatattttaacacaaacatgcacacaaaatattttgtgacaaaagtaaaacagtattattgcaattataaa |
11288566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 11288432 - 11288460
Alignment:
| Q |
17 |
caaaggagcaaatctcaccaaatatacat |
45 |
Q |
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| T |
11288432 |
caaaggagcaaatctcaccaaatatacat |
11288460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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