View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20186_high_4 (Length: 452)
Name: NF20186_high_4
Description: NF20186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20186_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 35796889 - 35797274
Alignment:
| Q |
17 |
gtttgtttctttccttggtgtgttatacatttacattggatgccttttaagagaacagaacatgtagacatgtatagtgtgtcgacaaatgaaataggca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||| || |
|
|
| T |
35796889 |
gtttgtttctttccttggtgtgttatacatttacattggatgcctct-aagagaatagaacat--------gtatagtgtgtcgacaaatgaaatagaca |
35796979 |
T |
|
| Q |
117 |
aacaatgagttatttaaattattcagttgtaggaaacttcaattggagcttcttaaaatgttgtaaaatgcgtagaatccaaatcaagtctaaactagaa |
216 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35796980 |
aacaacgagttatttaaattatttagttgtaggaaacttcaattggagcttcttaaaatgttgtaaaatgcgtagaatccaaatcaagtctaaactagaa |
35797079 |
T |
|
| Q |
217 |
agaggcaattgaacccttatctcaaatacttactttatgttagaaagcttttcacttgtattccaggcaaaatttcatatcttctttcttttctatgagt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35797080 |
agaggcaattgaacccttatctcaaatacttactttatgttagaaagcttttcaattgtattccaggcaaaatttcatatcttctttcttttctatgagt |
35797179 |
T |
|
| Q |
317 |
tatcttgtgtaatcacaac------------------catagtgaaaagtcaaagggcttgtttaagctagtagatttgagaagacaaagtcctt |
393 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35797180 |
tatcttgtgtaatcacaaccatttttttttattccatcatagtgaaaagtcaaagggcttgtttaagctagtagatttgagaagacaaagtcctt |
35797274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 35797297 - 35797346
Alignment:
| Q |
391 |
ctttgtagaggaaatggaagatatatgaccaacttaaatctccacttctc |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35797297 |
ctttgtagaggaaatggaagatatatgaccaacttaaatctccacttctc |
35797346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University