View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20186_high_9 (Length: 396)
Name: NF20186_high_9
Description: NF20186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20186_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 379
Target Start/End: Complemental strand, 2436184 - 2435814
Alignment:
| Q |
9 |
gagatgaactagggatgtgtaaatggaactgtcattttgcatcaggctttcgtgagatcctgtttccatgatcttaccattttgaacaactgcaatgatg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2436184 |
gagatgaactagggatgtgtaaatggaactgtcattttgcatgaggctttcgtgagatcctgtttccatgatcttaccattttgaacaactgcaatgatg |
2436085 |
T |
|
| Q |
109 |
tctgcattttggatggtggataagcggtgagcgatgatgatggtggtgcgtccaactacagctttgtctagagcttcttggacaactcgttcagattcag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2436084 |
tctgcattttggatggtggataagcggtgagcgatgatgatggtggtgcgtccaactacagctttgtctagagcttcttggacaactcgttcagattcag |
2435985 |
T |
|
| Q |
209 |
aatcgagagcacttgttgcttcgtctagcaatagaatttttggcatttttactatggctcttgcaatggcaatcctttgcttttgtcccccagacatttg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435984 |
aatcgagagcacttgttgcttcgtctagcaatagaatttttggcatttttactatggctcttgcaatggcaatcctttgcttttgtcccccagacatttg |
2435885 |
T |
|
| Q |
309 |
aattcccctctccccaacctgtagtagtaagcatacaattaacatcttgctttaactcaacatacctttct |
379 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2435884 |
aattcccctctccccaacctgtagtaataagcatacaattaacatcttgctttaactcaacatacctttct |
2435814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 356
Target Start/End: Original strand, 2571437 - 2571784
Alignment:
| Q |
9 |
gagatgaactagggatgtgtaaatggaactgtcattttgcatcaggctttcgtgagatcctgtttccatgatcttaccattttgaacaactgcaatgatg |
108 |
Q |
| |
|
|||| |||| ||||||||||||| ||| ||||||||||||| ||||| ||||||||||| ||||||||| | |||||||||||| || ||||| ||| |
|
|
| T |
2571437 |
gagacgaacaagggatgtgtaaagagaattgtcattttgcatgaggctatcgtgagatcccatttccatgaccagaccattttgaacgaccgcaataatg |
2571536 |
T |
|
| Q |
109 |
tctgcattttggatggtggataagcggtgagcgatgatgatggtggtgcgtccaactacagctttgtctagagcttcttggacaactcgttcagattcag |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
2571537 |
tctgcattttggatggtagataagcggtgagcgatgatgatggtggttcgtccaactgcagctttgtctagagcttcttggacgactcgttcggattcag |
2571636 |
T |
|
| Q |
209 |
aatcgagagcacttgttgcttcgtctagcaatagaatttttggcatttttactatggctcttgcaatggcaatcctttgcttttgtcccccagacatttg |
308 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
2571637 |
aatcgagtgcacttgttgcttcgtctaacaatagaatttttggcatttttatgatggctcttgcaattgcaattctttgcttttgtccccctgacatttg |
2571736 |
T |
|
| Q |
309 |
aattcccctctccccaacctgtagtagtaagcatacaattaacatctt |
356 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2571737 |
aactcccctctccccaacctgtagtagtaaacatacaattaacatctt |
2571784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 334
Target Start/End: Original strand, 2674928 - 2675253
Alignment:
| Q |
9 |
gagatgaactagggatgtgtaaatggaactgtcattttgcatcaggctttcgtgagatcctgtttccatgatcttaccattttgaacaactgcaatgatg |
108 |
Q |
| |
|
|||| |||| ||||| ||||||| ||| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2674928 |
gagacgaacgagggaggtgtaaagagaattttcattttgcatgaggctttcgtgagatcccgtttccatgatcttaccattttggacaactgcaatgatg |
2675027 |
T |
|
| Q |
109 |
tctgcattttggatggtggataagcggtgagcgatgatgatggtggtgcgtccaactacagctttgtctagagcttcttggacaactcgttcagattcag |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2675028 |
tctgcattttggatggttgataagcggtgagcgatgatgatggtggtgcgtccaaccgccgctttgtctagagcttcttgaacaactcgttcggattcag |
2675127 |
T |
|
| Q |
209 |
aatcgagagcacttgttgcttcgtctagcaatagaatttttggcatttttactatggctcttgcaatggcaatcctttgcttttgtcccccagacatttg |
308 |
Q |
| |
|
|||| || |||||||||||||| ||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| || |
|
|
| T |
2675128 |
aatcaagtgcacttgttgcttcatctagtaataaaattttaggcatttttattatggctcttgcaatggcaatcctttgtttttgtccccctgacatctg |
2675227 |
T |
|
| Q |
309 |
aattcccctctccccaacctgtagta |
334 |
Q |
| |
|
|| ||| ||||||||||||||||||| |
|
|
| T |
2675228 |
aactcctctctccccaacctgtagta |
2675253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 28 - 338
Target Start/End: Complemental strand, 2589995 - 2589685
Alignment:
| Q |
28 |
taaatggaactgtcattttgcatcaggctttcgtgagatcctgtttccatgatcttaccattttgaacaactgcaatgatgtctgcattttggatggtgg |
127 |
Q |
| |
|
||||| ||| |||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2589995 |
taaattgaattgtcatcttgcacgaggctttcgtgagatcctatttccataatcttaccattttgaacaactgcaatgatgtctgcattttggatggtag |
2589896 |
T |
|
| Q |
128 |
ataagcggtgagcgatgatgatggtggtgcgtccaactacagctttgtctagagcttcttggacaactcgttcagattcagaatcgagagcacttgttgc |
227 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||||| |
|
|
| T |
2589895 |
ataggcggtgagcgatgatgatggtggtgcgtccaacggtagctttgtctagagcttcttggacaaccctttctgattcagaatcgagtgcacttgttgc |
2589796 |
T |
|
| Q |
228 |
ttcgtctagcaatagaatttttggcatttttactatggctcttgcaatggcaatcctttgcttttgtcccccagacatttgaattcccctctccccaacc |
327 |
Q |
| |
|
||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||| | ||| ||||| | |||| |
|
|
| T |
2589795 |
ttcatctagcaatagaatttttggcatttttatgatagctcttgcaatggcaatcctttgcttttgcccccctgacatttgtactcctctctctctaacc |
2589696 |
T |
|
| Q |
328 |
tgtagtagtaa |
338 |
Q |
| |
|
||||||||||| |
|
|
| T |
2589695 |
tgtagtagtaa |
2589685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 338
Target Start/End: Complemental strand, 2621581 - 2621252
Alignment:
| Q |
9 |
gagatgaactagggatgtgtaaatggaactgtcattttgcatcaggctttcgtgagatcctgtttccatgatcttaccattttgaacaactgcaatgatg |
108 |
Q |
| |
|
|||| |||| ||||| | ||||| ||| ||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
2621581 |
gagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttccgcgatcataccattttgaacaaccgcaatgatg |
2621482 |
T |
|
| Q |
109 |
tctgcattttggatggtggataagcggtgagcgatgatgatggtggtgcgtccaactacagctttgtctagagcttcttggacaactcgttcagattcag |
208 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
2621481 |
tctgcattttgaatggtggataagcggtgagcgatgatgatggtggtgcgtccaacggtggctttgtctaaagcttcttggacaactctttcggattcag |
2621382 |
T |
|
| Q |
209 |
aatcgagagcacttgttgcttcgtctagcaatagaatttttggcatttttactatggctcttgcaatggcaatcctttgcttttgtcccccagacatttg |
308 |
Q |
| |
|
|||| || |||||||||||||| |||||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
2621381 |
aatctagtgcacttgttgcttcatctagcaaaagaatttttggcatttttatgatagctcttgcaatggaaatcctttgcttttgccccccagacatttg |
2621282 |
T |
|
| Q |
309 |
aattcccctctccccaacctgtagtagtaa |
338 |
Q |
| |
|
|| ||| |||||||||||||| |||||||| |
|
|
| T |
2621281 |
aactcctctctccccaacctgcagtagtaa |
2621252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 2449358 - 2449016
Alignment:
| Q |
14 |
gaactagggatgtgtaaatggaactgtcattttgcatcaggctttcgtgagatcctgtttccatgatcttaccattttgaacaactgcaatgatgtctgc |
113 |
Q |
| |
|
|||| ||||| ||||||| || |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
2449358 |
gaacgagggaggtgtaaagagagctgtcattttgcataaggctttcgtgagatcctgtttccacgatcttaccattttgaacgattgcaatgatatctgc |
2449259 |
T |
|
| Q |
114 |
attttggatggtggataagcggtgagcgatgatgatggtggtgcgtccaactacagctttgtctagagcttcttggacaactcgttcagattcagaatcg |
213 |
Q |
| |
|
| || ||||||||||||||||||||||||||| |||||||||||| ||||| ||||| || | ||||||||||||||||||||| |||||| |||| |
|
|
| T |
2449258 |
agttctgatggtggataagcggtgagcgatgataatggtggtgcgttcaactgtggctttctcaaaagcttcttggacaactcgttcggattcaaaatct |
2449159 |
T |
|
| Q |
214 |
agagcacttgttgcttcgtctagcaatagaatttttggcatttttactatggctcttgcaatggcaatcctttgcttttgtcccccagacatttgaattc |
313 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||| |||| | ||||||||||||||||| ||||||||||||||||||||| |||||||| | || |
|
|
| T |
2449158 |
agtgcacttgttgcttcgtctagcaatagaattcttggatttttgattatggctcttgcaatggaaatcctttgcttttgtccccctgacatttgtactc |
2449059 |
T |
|
| Q |
314 |
ccctctccccaacctgtagtagtaagcatacaattaacatctt |
356 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
2449058 |
ccctctccccaacctatagtagtaaatatacaattaccatctt |
2449016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 2598288 - 2598537
Alignment:
| Q |
107 |
tgtctgcattttggatggtggataagcggtgagcgatgatgatggtggtgcgtccaactacagctttgtctagagcttcttggacaactcgttcagattc |
206 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
2598288 |
tgtctgcattttggatggtagataatcggtgagcgatgatgatggtggtgcgtccaactgaagctttgtctagagcttcttggacgactcgttcggattc |
2598387 |
T |
|
| Q |
207 |
agaatcgagagcacttgttgcttcgtctagcaatagaatttttggcatttttactatggctcttgcaatggcaatcctttgcttttgtcccccagacatt |
306 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
2598388 |
agaatcgagtgcacttgttgcttcgtctaacaatagaatttttggcatttttatgatggctcttgcaattgcaattctttgcttttgtccccctgacatt |
2598487 |
T |
|
| Q |
307 |
tgaattcccctctccccaacctgtagtagtaagcatacaattaacatctt |
356 |
Q |
| |
|
|| | ||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
2598488 |
tgtactcccctctccccaacctgtagtagtaaacatgtaattaacatctt |
2598537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 52 - 350
Target Start/End: Original strand, 2643122 - 2643420
Alignment:
| Q |
52 |
aggctttcgtgagatcctgtttccatgatcttaccattttgaacaactgcaatgatgtctgcattttggatggtggataagcggtgagcgatgatgatgg |
151 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||| |||||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
2643122 |
aggctttcatgagttcctgtttccattatcttgccattttgaaacactgcaatgatgtcagcattttggatggtggataggcgatgagcgatgatgatgg |
2643221 |
T |
|
| Q |
152 |
tggtgcgtccaactacagctttgtctagagcttcttggacaactcgttcagattcagaatcgagagcacttgttgcttcgtctagcaatagaatttttgg |
251 |
Q |
| |
|
| |||||||||||| | ||||||||||||| |||||||||| |||||| ||||||||||| || |||||||| |||||||| | ||||| |||||| || |
|
|
| T |
2643222 |
ttgtgcgtccaactgcgactttgtctagagcgtcttggacaattcgttcggattcagaatcaagtgcacttgtcgcttcgtccaacaataaaattttagg |
2643321 |
T |
|
| Q |
252 |
catttttactatggctcttgcaatggcaatcctttgcttttgtcccccagacatttgaattcccctctccccaacctgtagtagtaagcatacaattaa |
350 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
2643322 |
catttttattatggctcttgcaatggcaatcctttgtttttgcccccctgacatttgaactcctctctccccaacctgtagtagtaaacatgcaattaa |
2643420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 329
Target Start/End: Original strand, 3431173 - 3431292
Alignment:
| Q |
210 |
atcgagagcacttgttgcttcgtctagcaatagaatttttggcatttttactatggctcttgcaatggcaatcctttgcttttgtcccccagacatttga |
309 |
Q |
| |
|
|||||||||||| ||||||||||||| | || || ||||| |||| | || ||||||||||| |||||||||||||||||||| ||||| | |||| |
|
|
| T |
3431173 |
atcgagagcactagttgcttcgtctaagagaaggatctttggatttttcaacatagctcttgcaattgcaatcctttgcttttgtccaccagataattga |
3431272 |
T |
|
| Q |
310 |
attcccctctccccaacctg |
329 |
Q |
| |
|
| ||| | ||| |||||||| |
|
|
| T |
3431273 |
actcctcgctcaccaacctg |
3431292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 33788351 - 33788449
Alignment:
| Q |
198 |
ttcagattcagaatcgagagcacttgttgcttcgtctagcaatagaatttttggcatttttactatggctcttgcaatggcaatcctttgcttttgtcc |
296 |
Q |
| |
|
|||||||||||| || || ||||| |||||||| || |||| |||||| ||| |||||| || |||||||||||||| || |||||||||||||| |
|
|
| T |
33788351 |
ttcagattcagagtcaagtgcactagttgcttcatcaagcagaagaattactggattttttatgatagctcttgcaatggctattctttgcttttgtcc |
33788449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 293
Target Start/End: Complemental strand, 27731374 - 27731253
Alignment:
| Q |
172 |
ttgtctagagcttcttggacaactcgttcagattcagaatcgagagcacttgttgcttcgtctagcaatagaatttttggcatttttactatggctcttg |
271 |
Q |
| |
|
||||||| ||||| ||| ||||| ||||| ||||| ||| || |||||||||||||| || ||||||| ||||| || || ||| || ||||||| |
|
|
| T |
27731374 |
ttgtctaaagcttgttgtacaacacgttccgattcgacatctagtgcacttgttgcttcatcaagcaataatattttagggtttcttaaaatagctcttg |
27731275 |
T |
|
| Q |
272 |
caatggcaatcctttgcttttg |
293 |
Q |
| |
|
||||||| | |||||||||||| |
|
|
| T |
27731274 |
caatggccaccctttgcttttg |
27731253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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