View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20186_low_13 (Length: 365)
Name: NF20186_low_13
Description: NF20186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20186_low_13 |
 | |
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| [»] scaffold0060 (3 HSPs) |
| | |
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| [»] scaffold1769 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 8348650 - 8348302
Alignment:
| Q |
1 |
agaattcgaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattggtaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8348650 |
agaattcgaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattggtaat |
8348551 |
T |
|
| Q |
101 |
gaatatggctaccctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8348550 |
gaatatggctaccctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaact |
8348451 |
T |
|
| Q |
201 |
ctacaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaactttcaaaaatgtggaatttcaact--tatcaggttaattttgttttgg |
296 |
Q |
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|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8348450 |
ctacaattcgagacagttgaaagaatacacttgaaagaggttacgaataaactttcaaaaatgtggaatttcaacttatatcaggttaattttgttttgg |
8348351 |
T |
|
| Q |
297 |
ggcattctataagttaaaagagataaaaacaattaaagagggcatgtca |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8348350 |
ggcattctataagttaaaagagataaaaacaattaaagagggtatgtca |
8348302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 157 - 316
Target Start/End: Complemental strand, 8364505 - 8364347
Alignment:
| Q |
157 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattcgacagttgaaagaatgcacttgaaagaggttacgaataaactttcaa |
256 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
8364505 |
tatgagttggtcttgagattttgaaatttagcatgttcggcactctacaattcgacagttgaaagaatacacttgatagaggttaagaataaactttcaa |
8364406 |
T |
|
| Q |
257 |
aaatgtggaatttcaacttatcaggttaattttgttttggggcattctataagttaaaag |
316 |
Q |
| |
|
||| ||||| |||||||||||| ||| |||||||| ||| ||||||| ||||||||||| |
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|
| T |
8364405 |
aaa-ctggaacttcaacttatcatgtttattttgttatggagcattctgtaagttaaaag |
8364347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 105 - 316
Target Start/End: Original strand, 7915429 - 7915641
Alignment:
| Q |
105 |
atggctaccctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactc--t |
202 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| |||| ||||||| | ||||||||||||||||||||||||| |||||||||||| | |||| | |
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| T |
7915429 |
atggttaccttaacaggaacaactaatggagtgagaataaaaacttggaaggtatgagttggtcttgagattttgaaatttagcatgttctgcactctat |
7915528 |
T |
|
| Q |
203 |
acaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaactttcaaaaatgtggaatttcaacttatcaggttaattttgttttggggca |
300 |
Q |
| |
|
||||||| |||| ||||||| || ||||||| |||||||| ||||||| || |||| ||||| |||| |||| ||| |||||| |||||||||||| |
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| T |
7915529 |
acaattcaagacaattgaaaggatacacttgatagaggttaagaataaattt---aaaaagtggactttctacttttcatattaattatgttttggggca |
7915625 |
T |
|
| Q |
301 |
ttctataagttaaaag |
316 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
7915626 |
ttctataagtttaaag |
7915641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 8409898 - 8409804
Alignment:
| Q |
1 |
agaattcgaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattgg |
96 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||| ||||||| ||| || | ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
8409898 |
agaatttgaagaaattgccagtggtctgtgatacgctgtttagtac-aaaggaagccaaataccggctatagcgatgctaaatttagcagcattgg |
8409804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 157 - 316
Target Start/End: Complemental strand, 8442710 - 8442554
Alignment:
| Q |
157 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaacttt- |
253 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| || |||||| ||||| || |||||||||||| |||||| ||||| ||||||||| |
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|
| T |
8442710 |
tatgagttggtcttcagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagagg------ataaactttt |
8442617 |
T |
|
| Q |
254 |
caaaaatgtggaatttcaacttatcaggttaattttgttttggggcattctataagttaaaag |
316 |
Q |
| |
|
| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |
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|
| T |
8442616 |
ccggaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaag |
8442554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 7915315 - 7915371
Alignment:
| Q |
40 |
ttagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattgg |
96 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7915315 |
ttagtacaaaatcatgccaaataccggctatagcgatgctaaatttagcagcattgg |
7915371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 8442818 - 8442755
Alignment:
| Q |
3 |
aattcgaagaaattgccagtggtctgtgatacactgattagtacaaaatgatgtcaaataccgg |
66 |
Q |
| |
|
|||| |||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
8442818 |
aatttgaagaaatatccagtgttctatgatacactgtttagtacaaaatgatgtcaaataccgg |
8442755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 128
Target Start/End: Complemental strand, 8409762 - 8409728
Alignment:
| Q |
94 |
tggtaatgaatatggctaccctaacaggaacaact |
128 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8409762 |
tggtaatgaatatggttaccctaacaggaacaact |
8409728 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 113 - 296
Target Start/End: Original strand, 65260 - 65443
Alignment:
| Q |
113 |
cctaacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--g |
210 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| |||||| | | | |||||||| ||||||||||||| | ||||||||| || ||||||||||| | |
|
|
| T |
65260 |
cctaataggaacaactaatggagtgagattaaaaacttgaaaaaaa-gagttggttttgagattttgaaatatagcatgttaggcactctacaatttaag |
65358 |
T |
|
| Q |
211 |
acagttgaaagaatgcacttgaaagaggttacgaataaactttcaaaaatgtggaatttcaacttatcaggttaattttgttttgg |
296 |
Q |
| |
|
|||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
65359 |
acagttgaaagaataaacttgatagaggttaagaataaactttcaaaaa-ctggaatttcaacttatcatgttaattttgttttgg |
65443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 157 - 316
Target Start/End: Original strand, 69243 - 69399
Alignment:
| Q |
157 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaacttt- |
253 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || |||||| ||||| || |||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
69243 |
tatgagttggtcttgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagagg------ataaactttt |
69336 |
T |
|
| Q |
254 |
caaaaatgtggaatttcaacttatcaggttaattttgttttggggcattctataagttaaaag |
316 |
Q |
| |
|
| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
69337 |
ctggaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaag |
69399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 69161 - 69238
Alignment:
| Q |
19 |
cagtggtctgtgatacactgattagtacaaaatgatgtcaaataccggctacagcgatgctaaatttagcagcattgg |
96 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
69161 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccggttatagtgatgctaaatttagcagcattgg |
69238 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold1769
Description:
Target: scaffold1769; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 316
Target Start/End: Original strand, 322 - 478
Alignment:
| Q |
157 |
tatgagttggtcttgagattttgaagtttagcatgttcggaactctacaattc--gacagttgaaagaatgcacttgaaagaggttacgaataaacttt- |
253 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || |||||| ||||| || |||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
322 |
tatgagttggtcttgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaagaatagacttgatagagg------ataaactttt |
415 |
T |
|
| Q |
254 |
caaaaatgtggaatttcaacttatcaggttaattttgttttggggcattctataagttaaaag |
316 |
Q |
| |
|
|| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
416 |
caggaaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaag |
478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 230 - 277
Alignment:
| Q |
19 |
cagtggtctgtgatacactgattagtacaaaatgatgtcaaataccgg |
66 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
230 |
cagtgttctatgatacactgtttagtacaaaatgatgtcaaataccgg |
277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 24857408 - 24857499
Alignment:
| Q |
115 |
taacaggaacaactaatggagtgaggataataacttggcatatatgagttggtcttgagattttgaagtttagcatgttcggaactctacaa |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||||| || |||||||||| |||||||||| |||| |||| || ||||||||| |
|
|
| T |
24857408 |
taacaggaacaactaatggagtgagaataaaaacatggcaggtaaaagttggtcttaagattttgaaaattagtctgttaggcactctacaa |
24857499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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