View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20186_low_17 (Length: 339)
Name: NF20186_low_17
Description: NF20186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20186_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 255942 - 256070
Alignment:
| Q |
29 |
aaagaaagaaggaggctgatacagcagtagttgcaaatgacggtgctcttgtagatgatgatggcaaacccaaacgaacaggtctatagctctttttctt |
128 |
Q |
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|||| |||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
255942 |
aaaggaagaaggaggtggatatagcagtagttgcaaatgacggtgctcttttagatgatgatggcaaacccaaacgaacaggtctatagctctttttctt |
256041 |
T |
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| Q |
129 |
tctcaaaattttctgcatggtgaattata |
157 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
256042 |
tctcaaaattttctgcatggtgaattata |
256070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 228550 - 228418
Alignment:
| Q |
29 |
aaagaaagaaggaggctgatacagcagtagttgcaaatgacggtgctcttgtagatgatgatggcaaacccaaacgaacaggtct--atagctctttttc |
126 |
Q |
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|||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | ||| ||||||||| |
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| T |
228550 |
aaaggaagaaggaggtggatatagcagtagttgcaaatgacggtgctcttgtagatgatgatggcaagcccatacgaacaggtatacataactctttttc |
228451 |
T |
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| Q |
127 |
tttctcaaaattttctgcatggtgaattataat |
159 |
Q |
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|||| ||||||||| ||| ||||||| |||||| |
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| T |
228450 |
tttcgcaaaattttatgcttggtgaaatataat |
228418 |
T |
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