View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20186_low_18 (Length: 277)
Name: NF20186_low_18
Description: NF20186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20186_low_18 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 6439923 - 6440163
Alignment:
| Q |
10 |
atattattctcatttgcaaaagcctcgtgtacataacctcaaaatgaacaaaagatagcgcagtctaatcaatagaaattaaaatctcaatagaattatt |
109 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6439923 |
atattattctcatttgcaaaagccccgtgtacataacctcaaaatgaacaaaagatagcgcagtctaatcaatagaaattaaaatctcaatagaattctt |
6440022 |
T |
|
| Q |
110 |
aaaatttaatcaaattcattgac--atttataagaaaattatttgagtttattctaattcaataaatttatgggcattcaaaactannnnnnnaattatc |
207 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
6440023 |
aaaatttaataaaattcattgacatatttataagaaaattatttgagtttattctaattcaataaatttatgggtattcaaaactatttttttaattatc |
6440122 |
T |
|
| Q |
208 |
agttataatcttcatataaatggaaaagtctttgaaattaa |
248 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |
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| T |
6440123 |
agttataatcttcatataaatgaaaaagtctttgaaattaa |
6440163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 9269823 - 9270061
Alignment:
| Q |
10 |
atattattctcatttgcaaaagcctcgtgtacataacctcaaaatgaacaaaagatagcgcagtctaatcaatagaaattaaaatctcaatagaattatt |
109 |
Q |
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|||||||||||||||||||||| ||| |||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
9269823 |
atattattctcatttgcaaaagtctcatgtacaaaacctcaaaatgtacaaaagatagcgcactctaatcaatagaaattaaaatctcaacagaattatt |
9269922 |
T |
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| Q |
110 |
aaaatttaatcaaattcattgacatttataagaaaattatttgagtttattctaattcaataaatttatgggcattcaaaactannnnnnnaattatcag |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| | |||| || |
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| T |
9269923 |
aaaatttaatcaaattcattgacatttataagaacattatttaagtttattctgattcaataaatttatgggcattcaaaactatttttatagttatgag |
9270022 |
T |
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| Q |
210 |
ttataatcttcatataaatggaaaagtctttgaaattaa |
248 |
Q |
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|||| |||| || |||||||||||| |||| |||||||| |
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| T |
9270023 |
ttattatctccaaataaatggaaaaatcttcgaaattaa |
9270061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 15273766 - 15273523
Alignment:
| Q |
10 |
atattattctcatttgcaaaagcctcgtgtacataacctcaaaatgaacaaaagatagcgcagtctaatcaatagaaattaaaatctcaatagaattatt |
109 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15273766 |
atattattctcatttgcaaaagcctcatgtacataacctcaaaatgtataaaagatagcgcagtctaatcaatagaaattaaaatctcaatagaattatt |
15273667 |
T |
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| Q |
110 |
aaaatttaatcaaattcattgacatttataagaaaattatttgagtttattctaattcaataaatttatgggcattcaaaacta----nnnnnnnaatta |
205 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| |
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| T |
15273666 |
aaaattgaatcaaattcattgacatttataagaaaattatttgagttttttctgattcaataaatttatgggcattcaaaactatttttttttttaatta |
15273567 |
T |
|
| Q |
206 |
tcagttataatcttcatataaatggaaaagtctttgaaattaaa |
249 |
Q |
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| T |
15273566 |
tgagttataatcttcatataaatggaaaagtcttcgaaattaaa |
15273523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 15454135 - 15453892
Alignment:
| Q |
10 |
atattattctcatttgcaaaagcctcgtgtacataacctcaaaatgaacaaaagatagcgcagtctaatcaatagaaattaaaatctcaatagaattatt |
109 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15454135 |
atattattctcatttgcaaaagcctcatgtacataacctcaaaatgtataaaagatagcgcagtctaatcaatagaaattaaaatctcaatagaattatt |
15454036 |
T |
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| Q |
110 |
aaaatttaatcaaattcattgacatttataagaaaattatttgagtttattctaattcaataaatttatgggcattcaaaacta----nnnnnnnaatta |
205 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| |
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| T |
15454035 |
aaaattgaatcaaattcattgacatttataagaaaattatttgagttttttctgattcaataaatttatgggcattcaaaactatttttttttttaatta |
15453936 |
T |
|
| Q |
206 |
tcagttataatcttcatataaatggaaaagtctttgaaattaaa |
249 |
Q |
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| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15453935 |
tgagttataatcttcatataaatggaaaagtcttcgaaattaaa |
15453892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 46515392 - 46515169
Alignment:
| Q |
26 |
caaaagcctcgtgtacataacctcaaaatgaacaaaagatagcgcagtctaatcaatagaaattaaaatctcaatagaattattaaaatttaatcaaatt |
125 |
Q |
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|
|||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46515392 |
caaaagcctcatgtacataacctcaaaatgtacaaaagatagcacagtctaatcaatagaaattaaaatctcaatagaattattaaaatttaatcaaatt |
46515293 |
T |
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| Q |
126 |
cattgacatttataagaaaattatttgagtttattctaattcaataaatttatgggcattcaaaactannnnnnnaattatcagttataatcttcatata |
225 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| |
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| T |
46515292 |
cattgacatttataagaaaattatttgagtttattcggattcaataaatttatgggcattcaaaactatttttttaattatgagttataatctccatata |
46515193 |
T |
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| Q |
226 |
aatggaaaagtctttgaaattaaa |
249 |
Q |
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|||||||||||||| ||||||||| |
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| T |
46515192 |
aatggaaaagtcttcgaaattaaa |
46515169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 14287185 - 14287424
Alignment:
| Q |
10 |
atattattctcatttgcaaaagcctcgtgtacataacctcaaaatgaacaaaagatagcgcagtctaatcaatagaaattaaaatctcaatagaattatt |
109 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14287185 |
atattatcctcatttgcaaaagcctcatgtacattacctcaaaatgtacaaaaaatagcgcagtctaatcaatagaaattaaaatctcaatagaattatt |
14287284 |
T |
|
| Q |
110 |
aaaatttaatcaaattcattgacatttataagaaaattatttgagtttattctaattcaataaatttatgggcattcaaaactannnnnnnaattatcag |
209 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| | |||||| || |
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| T |
14287285 |
taaatttaatcaaattcattaacatttataagaaaattatttgagtttattctgattcaataaatttaaggggattcaaaacaatttctttaattatgag |
14287384 |
T |
|
| Q |
210 |
ttataatcttcatataaatggaaaagtctttgaaattaaa |
249 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| |
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| T |
14287385 |
ttataatcttcatataaatggaaaagtcttcgaaattaaa |
14287424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 66336 - 66564
Alignment:
| Q |
18 |
ctcatttgcaaaagcctcgtgtacataacctcaaaatgaacaaa-agatagcgcagtctaatcaatagaaattaaaatctcaatagaattattaaaattt |
116 |
Q |
| |
|
||||||||||||||||| ||| || ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
66336 |
ctcatttgcaaaagccttaagtaaatcacctcaaaatgtacaaagagatagcgtagtctaatcaatagaaattaaaatctcaatagaattattcaaattt |
66435 |
T |
|
| Q |
117 |
aatcaaattcattgacatttataagaaaattatttgagtttattctaattcaataaatttatgggcattcaaaacta-nnnnnnnaattatcagttataa |
215 |
Q |
| |
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||||||||||||||||||||||| | |||||||||||||||||||| ||||| | |||| |||||||||||||| |||||| | |||||| |
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|
| T |
66436 |
aatcaaattcattgacatttatacgtaaattatttgagtttattctgattcatt---tttaaaggcattcaaaactattttgtttaattatgatttataa |
66532 |
T |
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| Q |
216 |
tcttcatataaatggaaaagtctttgaaatta |
247 |
Q |
| |
|
|| |||| ||||||||||||||| ||||||| |
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|
| T |
66533 |
tccgcatacaaatggaaaagtcttcgaaatta |
66564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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