View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20186_low_22 (Length: 248)
Name: NF20186_low_22
Description: NF20186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20186_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 54153175 - 54153318
Alignment:
| Q |
60 |
tattttactcaggattcagaacttttctataggtagtttggtgtcatgttatgccatttgatagaactgttttatcttccattagcttccaagcactgat |
159 |
Q |
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| T |
54153175 |
tattttactcaggattcagaacttctctataggtagtttggtgtcatgttatgccatttgatagaactgttttatcttccattagcttccaagcattgat |
54153274 |
T |
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| Q |
160 |
aaaacctaggtagaacatttgtatgatactcgccctgatctcaa |
203 |
Q |
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| T |
54153275 |
aaaacctaagtagaacatttgtatgatactcgccctgatctcaa |
54153318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 54127828 - 54127985
Alignment:
| Q |
23 |
tgattattaacggctttgaatttagttgtgcatt-atgtattttactcaggattcagaacttttctataggtagtttggtgtcatgttatgccatttgat |
121 |
Q |
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| T |
54127828 |
tgatgattaacagctttgaatatagttgtgaatgcatgtagtttactcctgttttagaactgttttataggtagtttggtgtcattttatgccatttgat |
54127927 |
T |
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| Q |
122 |
agaactgttttatcttccattagcttccaagcactgataaaacctaggtagaacattt |
179 |
Q |
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| T |
54127928 |
agaactgctttgtcttcaatcagcttccaagcattgataaaacctaagtagaacattt |
54127985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 54140944 - 54141078
Alignment:
| Q |
17 |
tgatgatgattattaacggctttgaatttagttgtgcatt-atgtattttactcaggattcagaacttttctataggtagtttggtgtcatgttatgcca |
115 |
Q |
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| T |
54140944 |
tgatgatgatgattaacagctctgaatttagttgtgcattcatgtatttcactcatgttttcgaactgttttttaggtagtttggtgtcatgttatgcca |
54141043 |
T |
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| Q |
116 |
tttgatagaactgttttatcttccattagcttcca |
150 |
Q |
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| T |
54141044 |
tttaatagaattgctttgccttccattagcttcca |
54141078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 54152137 - 54152197
Alignment:
| Q |
1 |
catattacaataatgttgatgatgattat---taacggctttgaatttagttgtgcattat |
58 |
Q |
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| T |
54152137 |
catactacaataatgttgatgatgatgatgattaaccgctttgaatttagttgtgcattat |
54152197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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