View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20186_low_3 (Length: 539)
Name: NF20186_low_3
Description: NF20186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20186_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 19340648 - 19340126
Alignment:
| Q |
1 |
atatttaactttttcttatttccttaatatcacaagttaatttgtttgcatttttcatatctacatatggttgtggtttctgtacttgtctcctacttcc |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19340648 |
atatttaactttttcttatttccttaacatcacaagttaatttgtttgcatttttcatatctacatatggttgtggtttctgtacttgtctcctacttcc |
19340549 |
T |
|
| Q |
101 |
attacctattttccttcaaaatttgaaaaagaaacgcataatccaatccggcaaagaggaacatccagatcgatccggcaagcaatgcacacgaaatagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19340548 |
attacctattttccttcaaaatttgaaaaagaaacgcataatccaatccggaaaagaggaacatccagatcgatccggcaagcaatgcacacgaaatagt |
19340449 |
T |
|
| Q |
201 |
gtcaaagaaacagtaagagacaatggcaatgattatcagtaagagacaattcattcatgctcttgtgttgcacagttagattcacaagtatcaactaact |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19340448 |
gtcaaagaaaaagtaagagacaatggcaatgattatcagtaagagacaattcattcatgctcttgtgttgcacagttagattcacaagtatcaactaact |
19340349 |
T |
|
| Q |
301 |
agtttttcaatagaaagtagaccattttgataatatttttacaagtacagaaaatgagtatattacattttacaagcacagaaaatgagaatattacata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19340348 |
agtttttcaatagaaagtagaccattttgataatatttttacaagtacagaaaatgagtatattacattttacaagcacagaaaatgagaatattacata |
19340249 |
T |
|
| Q |
401 |
aaccaataccataatcaagccnnnnnnnacttacattctagcttgcagtttttgaccaatatatattgattacttatattttccttctaattcacatgag |
500 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19340248 |
aaccaataccataatcaagcctttttttacttacattctagcttgcagtttttgaccaatatatattgattacttatattttccttctacttcacatgag |
19340149 |
T |
|
| Q |
501 |
gtagaaattaccgtcgttgaata |
523 |
Q |
| |
|
||||||||| | ||||| ||||| |
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|
| T |
19340148 |
gtagaaattgctgtcgtagaata |
19340126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 286 - 523
Target Start/End: Complemental strand, 19358386 - 19358149
Alignment:
| Q |
286 |
aagtatcaactaactagtttttcaatagaaagtagaccattttgataatatttttacaagtacagaaaatgagtatattacattttacaagcacagaaaa |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19358386 |
aagtatcaactaactagtttttcaatagaaagtagaccattttgataatatttttacaagtacagaaattgagtatattacattttacaagcacagaaaa |
19358287 |
T |
|
| Q |
386 |
tgagaatattacataaaccaataccataatcaagccnnnnnnnacttacattctagcttgcagtttttgaccaatatatattgattacttatattttcct |
485 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19358286 |
tgagaatattacagaaaccaataccataatcaagccgttttttacttgcattctagcttgcagtttttgaccaatatatattgattacttatattttcct |
19358187 |
T |
|
| Q |
486 |
tctaattcacatgaggtagaaattaccgtcgttgaata |
523 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||| ||||| |
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|
| T |
19358186 |
tctacttcacatgaggtagaaattgctgtcgtagaata |
19358149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 19370235 - 19370092
Alignment:
| Q |
1 |
atatttaactttttcttatttccttaatatcacaagttaatttgtttgcatttttcatatctacatatggttgtggtttctgtacttgtctcctacttcc |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19370235 |
atatttaactttttcttaattccttaacatcacaa----atttatttgcatttttcatatctacatatggttgtggtttctgtacttgtctcctacttcc |
19370140 |
T |
|
| Q |
101 |
attacctattttccttcaaaatttgaaaaagaaacgcataatccaatc |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19370139 |
attacctattttccttcaaaatttgaaaaagaaacgcataatccaatc |
19370092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 459 - 523
Target Start/End: Original strand, 19499824 - 19499889
Alignment:
| Q |
459 |
atatatattgattacttatattttcc-ttctaattcacatgaggtagaaattaccgtcgttgaata |
523 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||| ||||||||||||||||||| | ||||| ||||| |
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|
| T |
19499824 |
atatatattgataatttatattttcccttctacttcacatgaggtagaaattgctgtcgtagaata |
19499889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 509
Target Start/End: Complemental strand, 19399925 - 19399884
Alignment:
| Q |
469 |
attacttatattttcc-ttctaattcacatgaggtagaaatt |
509 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
19399925 |
attacttatattttcccttctacttcacatgaggtagaaatt |
19399884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 319
Target Start/End: Original strand, 18336135 - 18336178
Alignment:
| Q |
276 |
ttagattcacaagtatcaactaactagtttttcaatagaaagta |
319 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
18336135 |
ttagattcacaagaaccaactaactagtttttcaatagaaagta |
18336178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 319
Target Start/End: Complemental strand, 26615235 - 26615192
Alignment:
| Q |
276 |
ttagattcacaagtatcaactaactagtttttcaatagaaagta |
319 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
26615235 |
ttagattcacaagaaccaactaactagtttttcaatagaaagta |
26615192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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