View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20186_low_4 (Length: 489)

Name: NF20186_low_4
Description: NF20186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20186_low_4
NF20186_low_4
[»] chr4 (7 HSPs)
chr4 (12-369)||(54151811-54152160)
chr4 (110-244)||(54140708-54140840)
chr4 (24-91)||(54127753-54127820)
chr4 (110-253)||(54127558-54127711)
chr4 (50-91)||(54140875-54140916)
chr4 (260-390)||(47532979-47533109)
chr4 (452-489)||(54151756-54151793)
[»] chr7 (4 HSPs)
chr7 (260-390)||(16698369-16698499)
chr7 (260-390)||(17672605-17672735)
chr7 (275-359)||(31251816-31251900)
chr7 (297-391)||(38453042-38453135)
[»] scaffold0219 (1 HSPs)
scaffold0219 (262-323)||(13304-13365)
[»] chr6 (1 HSPs)
chr6 (340-393)||(3793696-3793749)
[»] chr2 (1 HSPs)
chr2 (359-391)||(42117312-42117344)
[»] chr1 (1 HSPs)
chr1 (336-392)||(50441229-50441285)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 369
Target Start/End: Complemental strand, 54152160 - 54151811
Alignment:
Q  12 catcatcaacattattgtaatatgattcatcactagtggtagcctatagataacaaacaaggaaacttgaagatgtaaattttaagtattaattgcacaa 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  54152160 catcatcaacattattgtagtatgattcatcactagtggtagcctatagataacaaacaaggaaacttgaagatgtaaattttaagtat-aattgcacaa 54152062  T
Q  112 gttcaatattatttgcataagtttttcactagaatatacattaatcctgaagatgattaatgttcaaagattgattgacaagcaattcaaatggtttgat 211  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  54152061 gttcaatattatttgcataaatttgtcactagaatatacattaatcctgaagatgattaatgtt-------tgattgacaagcaattcaaatggtttgat 54151969  T
Q  212 aaggtcggtactattgtaatgaagtgaaaagatgcaagaaaaataaaaggaaattgcacatctccctttcaaaattgttcctttccttaaaaatgtctaa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  54151968 aaggtcggtactattgtaatgaagtgaaaagatgcaagaaaaataaaaggaaattgcacatctccctttcaaaattgttccttttcttaaaaatgtctca 54151869  T
Q  312 catgagttaacttatgtttgacaattttcaacgtaagttaattcatgtaggcacaaaa 369  Q
    |||||||||||||||||| || |||||||||| |||||||| ||||||||||||||||    
T  54151868 catgagttaacttatgttcgataattttcaacataagttaactcatgtaggcacaaaa 54151811  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 110 - 244
Target Start/End: Complemental strand, 54140840 - 54140708
Alignment:
Q  110 aagttcaatattatttgcataagtttttcactagaatatacattaatcctgaagatgattaatgttcaaagattgattgacaagcaattcaaatggtttg 209  Q
    ||||||||| |||||||||||| ||| | |||| |||||||||||||| ||||||| |||||||||||||||    ||||||| ||||||||||||||||    
T  54140840 aagttcaatgttatttgcataaatttcttactaaaatatacattaatcttgaagatcattaatgttcaaaga----ttgacaaacaattcaaatggtttg 54140745  T
Q  210 ataaggtcgg--tactattgtaatgaagtgaaaagat 244  Q
    |||||| | |  |||||||||||| ||||||||||||    
T  54140744 ataaggcctgtatactattgtaataaagtgaaaagat 54140708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 54127820 - 54127753
Alignment:
Q  24 tattgtaatatgattcatcactagtggtagcctatagataacaaacaaggaaacttgaagatgtaaat 91  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  54127820 tattgtaatacgattcatcactaacggtagcctatagataacaaacagggaaacttgaagatgtaaat 54127753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 253
Target Start/End: Complemental strand, 54127711 - 54127558
Alignment:
Q  110 aagttcaatattatttgcataagtttttcactagaatatacattaatcctgaagatgattaatgttcaa----agatt----gattgacaagcaattcaa 201  Q
    |||||||||||||||||||||||||| | ||||  ||||||||||||| ||||||||||| || |||||    | |||    ||||||||| ||||||||    
T  54127711 aagttcaatattatttgcataagtttcttactaacatatacattaatcttgaagatgattcatattcaaattcaaattcaaagattgacaaacaattcaa 54127612  T
Q  202 atggtttgataaggtcgg--tactattgtaatgaagtgaaaagatgcaagaaaa 253  Q
    ||||||| |||||| | |  ||| |||||||| |||||| |||||| |||||||    
T  54127611 atggtttcataaggactgtctacaattgtaataaagtgacaagatgtaagaaaa 54127558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 54140916 - 54140875
Alignment:
Q  50 gtagcctatagataacaaacaaggaaacttgaagatgtaaat 91  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  54140916 gtagcctatagataacaaacaaggaaacttgaagatgtaaat 54140875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 390
Target Start/End: Original strand, 47532979 - 47533109
Alignment:
Q  260 ggaaattgcacatctccctttcaaaattgttcctttccttaaaaatgtctaacatgagttaacttatgtttgacaattttcaacgtaagttaattcatgt 359  Q
    ||||||||||  || |||||| |||||||||| ||  || |||| | |||||||| | ||| || | ||| |||| |||||| | |||||||| ||| ||    
T  47532979 ggaaattgcatttcacccttttaaaattgttcattctctaaaaagtatctaacataaattatctcacgttggacatttttcaccataagttaactcacgt 47533078  T
Q  360 aggcacaaaagcaaaaggggaatgagcaaaa 390  Q
    | ||||||||||||||| |||||||| ||||    
T  47533079 atgcacaaaagcaaaagaggaatgaggaaaa 47533109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 54151793 - 54151756
Alignment:
Q  452 ttacatgccacaggttcaagtgactttagctccgtggc 489  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  54151793 ttacatgccacaaattcaagtgactttagctccgtggc 54151756  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 390
Target Start/End: Complemental strand, 16698499 - 16698369
Alignment:
Q  260 ggaaattgcacatctccctttcaaaattgttcctttccttaaaaatgtctaacatgagttaacttatgtttgacaattttcaacgtaagttaattcatgt 359  Q
    ||||||||| | ||||||||| ||||||| || || ||||||||||||  | |||||||||||| | | | |||| ||| ||||||  ||||| ||| ||    
T  16698499 ggaaattgctcttctcccttttaaaattgctcattcccttaaaaatgttcagcatgagttaactcacgctagacattttacaacgtgtgttaactcacgt 16698400  T
Q  360 aggcacaaaagcaaaaggggaatgagcaaaa 390  Q
    ||||||||||| || ||||||||||||||||    
T  16698399 aggcacaaaaggaagaggggaatgagcaaaa 16698369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 390
Target Start/End: Complemental strand, 17672735 - 17672605
Alignment:
Q  260 ggaaattgcacatctccctttcaaaattgttcctttccttaaaaatgtctaacatgagttaacttatgtttgacaattttcaacgtaagttaattcatgt 359  Q
    ||||||||| | ||||||||| ||||||| || || ||||||||||||  | |||||||||||| | | | |||| ||| ||||||  ||||| ||| ||    
T  17672735 ggaaattgctcttctcccttttaaaattgctcattcccttaaaaatgttcagcatgagttaactcacgctagacattttacaacgtgtgttaactcacgt 17672636  T
Q  360 aggcacaaaagcaaaaggggaatgagcaaaa 390  Q
    ||||||||||| || ||||||||||||||||    
T  17672635 aggcacaaaaggaagaggggaatgagcaaaa 17672605  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 275 - 359
Target Start/End: Complemental strand, 31251900 - 31251816
Alignment:
Q  275 ccctttcaaaattgttcctttccttaaaaatgtctaacatgagttaacttatgtttgacaattttcaacgtaagttaattcatgt 359  Q
    ||||||| ||||||||| |||||| |||||||||||||||||||||||| | | | |||  |||||||||| |||||| ||||||    
T  31251900 ccctttctaaattgttcatttcctgaaaaatgtctaacatgagttaactcacgctcgacttttttcaacgtgagttaactcatgt 31251816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 391
Target Start/End: Complemental strand, 38453135 - 38453042
Alignment:
Q  297 cttaaaaatgtctaacatgagttaacttatgtttgacaattttcaacgtaagttaattcatgtaggcacaaaagcaaaaggggaatgagcaaaac 391  Q
    ||||||||| |||||||| |||||||| | ||| |||| |||||||||| |||| | ||   ||||||||||||| ||||| ||| |||||||||    
T  38453135 cttaaaaatatctaacattagttaactcacgttcgacatttttcaacgtgagttgactcccataggcacaaaagc-aaaggagaaggagcaaaac 38453042  T

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Target: scaffold0219 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 13304 - 13365
Alignment:
Q  262 aaattgcacatctccctttcaaaattgttcctttccttaaaaatgtctaacatgagttaact 323  Q
    ||||||||| |||||| | ||||||||||| || |||||   ||||||||||||||||||||    
T  13304 aaattgcacttctcccatccaaaattgttcattcccttatttatgtctaacatgagttaact 13365  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 3793696 - 3793749
Alignment:
Q  340 caacgtaagttaattcatgtaggcacaaaagcaaaaggggaatgagcaaaacta 393  Q
    |||||||| ||||  |||||||| ||||||||||||| ||||||| ||||||||    
T  3793696 caacgtaaattaacgcatgtaggtacaaaagcaaaagcggaatgatcaaaacta 3793749  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 391
Target Start/End: Original strand, 42117312 - 42117344
Alignment:
Q  359 taggcacaaaagcaaaaggggaatgagcaaaac 391  Q
    |||||||||||| ||||||||||||||||||||    
T  42117312 taggcacaaaagtaaaaggggaatgagcaaaac 42117344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 50441285 - 50441229
Alignment:
Q  336 ttttcaacgtaagttaattcatgtaggcacaaaagcaaaaggggaatgagcaaaact 392  Q
    ||||||| || | |||| ||| ||||||| |||||||||| ||||||||||||||||    
T  50441285 ttttcaaggtgaattaactcacgtaggcataaaagcaaaacgggaatgagcaaaact 50441229  T

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