View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20186_low_7 (Length: 429)

Name: NF20186_low_7
Description: NF20186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20186_low_7
NF20186_low_7
[»] chr8 (12 HSPs)
chr8 (30-221)||(15446568-15446760)
chr8 (226-276)||(15314723-15314773)
chr8 (226-276)||(15495092-15495142)
chr8 (226-276)||(15447564-15447614)
chr8 (227-276)||(15303850-15303899)
chr8 (227-276)||(15484219-15484268)
chr8 (70-178)||(18052352-18052460)
chr8 (226-275)||(15285334-15285383)
chr8 (50-219)||(15313706-15313875)
chr8 (226-275)||(15465703-15465752)
chr8 (50-219)||(15494075-15494244)
chr8 (226-263)||(18064124-18064161)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 6e-81; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 15446568 - 15446760
Alignment:
Q  30 ggtgaactcaaaaacaaacgttttaaattgaagagattagcaaaatttc-gatgggtcacaactccagagagtgaattttctccaacacccaatacctcc 128  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15446568 ggtgaacccaaaaacaaatgttttaaattaaagagattagcaaaatgtctgatgggtcacaactccagagagtgaattttctccaacacccaataccttc 15446667  T
Q  129 aaattcgagaggtttcccaaactttgaggaaggttaccaatcaagttatttgaagcaacatcgaaggcagttaaagatgataaattccccaaa 221  Q
    |||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15446668 aaattcgagaggttccccaaactttgaggaaggttaccggtcaagttatttgaagcaacatcgaaggcagttaaagatgataaattccccaaa 15446760  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 15314723 - 15314773
Alignment:
Q  226 gagtatttgtttgtctttttggttgcaagaagcatttgtctcacatattac 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15314723 gagtatttgtttgtctttttggttgcaagaagcatttgtctcacatattac 15314773  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 15495092 - 15495142
Alignment:
Q  226 gagtatttgtttgtctttttggttgcaagaagcatttgtctcacatattac 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15495092 gagtatttgtttgtctttttggttgcaagaagcatttgtctcacatattac 15495142  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 15447564 - 15447614
Alignment:
Q  226 gagtatttgtttgtctttttggttgcaagaagcatttgtctcacatattac 276  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15447564 gagtatttgtttgtctttttggttgcaagaagcatttatctcacatattac 15447614  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 15303850 - 15303899
Alignment:
Q  227 agtatttgtttgtctttttggttgcaagaagcatttgtctcacatattac 276  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15303850 agtatttgtttgtctttttggttgcaagaagtatttgtctcacatattac 15303899  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 15484219 - 15484268
Alignment:
Q  227 agtatttgtttgtctttttggttgcaagaagcatttgtctcacatattac 276  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15484219 agtatttgtttgtctttttggttgcaagaagtatttgtctcacatattac 15484268  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 178
Target Start/End: Original strand, 18052352 - 18052460
Alignment:
Q  70 caaaatttcgatgggtcacaactccagagagtgaattttctccaacacccaatacctccaaattcgagaggtttcccaaactttgaggaaggttaccaat 169  Q
    ||||||||| ||| |  |||| |||||| || ||||||||||||||| |||| |||||||||||||| || |  |||||||||| ||||||| || || |    
T  18052352 caaaatttctatgagatacaattccagatagagaattttctccaacatccaacacctccaaattcgatagttgccccaaactttcaggaaggctatcagt 18052451  T
Q  170 caagttatt 178  Q
    |||||||||    
T  18052452 caagttatt 18052460  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 15285334 - 15285383
Alignment:
Q  226 gagtatttgtttgtctttttggttgcaagaagcatttgtctcacatatta 275  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  15285334 gagtatttgtttgtcttttatgttgcaagaagcatttgtctgacatatta 15285383  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 15313706 - 15313875
Alignment:
Q  50 ttttaaattgaagagattagcaaaatttcgatgggtcacaactccagagagtgaattttctccaacacccaatacctccaaattcgagaggtttcccaaa 149  Q
    |||||||||||| || ||  ||||||||||||| ||||||||||| || ||   ||||||||| |||  ||| ||||| ||||| ||||| ||||| |||    
T  15313706 ttttaaattgaaaagtttgtcaaaatttcgatgcgtcacaactcctgaaaggttattttctcctacatacaacacctctaaatttgagagttttcctaaa 15313805  T
Q  150 ctttgaggaaggttaccaatcaagttatttgaagcaacatcgaaggcagttaaagatgataaattcccca 219  Q
    |||| ||||||  ||||  | ||||||||| |  ||||||| ||| |||| || ||||| | ||||||||    
T  15313806 ctttcaggaagactaccggttaagttatttaagacaacatcaaagacagtcaatgatgacacattcccca 15313875  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 15465703 - 15465752
Alignment:
Q  226 gagtatttgtttgtctttttggttgcaagaagcatttgtctcacatatta 275  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  15465703 gagtatttgtttgtcttttatgttgcaagaagcatttgtctgacatatta 15465752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 15494075 - 15494244
Alignment:
Q  50 ttttaaattgaagagattagcaaaatttcgatgggtcacaactccagagagtgaattttctccaacacccaatacctccaaattcgagaggtttcccaaa 149  Q
    |||||||||||| || ||  ||||||||||||| ||||||||||| || ||   ||||||||| |||  ||| ||||| ||||| ||||| ||||| |||    
T  15494075 ttttaaattgaaaagtttgtcaaaatttcgatgcgtcacaactcctgaaaggttattttctcctacatacaacacctctaaatttgagagttttcctaaa 15494174  T
Q  150 ctttgaggaaggttaccaatcaagttatttgaagcaacatcgaaggcagttaaagatgataaattcccca 219  Q
    |||| ||||||  ||||  | ||||||||| |  ||||||| ||| |||| || ||||| | ||||||||    
T  15494175 ctttcaggaagactaccggttaagttatttaagacaacatcaaagacagtcaatgatgacacattcccca 15494244  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 18064124 - 18064161
Alignment:
Q  226 gagtatttgtttgtctttttggttgcaagaagcatttg 263  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  18064124 gagtatttgtttgtccttttggttgcaagaagcatttg 18064161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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