View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20186_low_8 (Length: 409)
Name: NF20186_low_8
Description: NF20186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20186_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 21 - 318
Target Start/End: Original strand, 5831006 - 5831304
Alignment:
| Q |
21 |
ataacatgcgtagtgcctggattggccaatatagatacaaccaacattcgaattgtacaagttggacataaacagaggaaaatgtgaactaaaaacgaaa |
120 |
Q |
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| T |
5831006 |
ataacatgcatagtgtctggattggccaatatagatacaaccaacattcgaattgtacaagttggacataaacagaggaaaatgtgaactaaaaacgaaa |
5831105 |
T |
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| Q |
121 |
atgaggagaattgataacttacctcttgattatggcttccaaaatgatgaaatgcgaagtttgtaaggtggtttagatggaaaatcaagtatattttaag |
220 |
Q |
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| T |
5831106 |
atgaggagaattgataacttacctcttgattatggcttccaaaatggtgaaatgcgaagtttgtaaggtggtttagatggaaaatcaagtatattttaag |
5831205 |
T |
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| Q |
221 |
ggttttagatca-ttttttaatcaatttgttaaagggaaatgtaaaatgatcagccaaaaagttgtccacaccgtatattaatacgatttgttatacaa |
318 |
Q |
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| T |
5831206 |
ggttttagatcatttttttaatcaatttgttaaagggaaatgtaaaatgaacagccaaaaagttgtccacaccgtatattaatacggtttgttatacaa |
5831304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 5831393 - 5831439
Alignment:
| Q |
316 |
caatataacattactcaaaattaaaacaaaaccaatttaatcacatc |
362 |
Q |
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| T |
5831393 |
caatataacattactcaaaattaaaacaaaaccaatttaatcacatc |
5831439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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