View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20186_low_9 (Length: 408)
Name: NF20186_low_9
Description: NF20186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20186_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 127 - 392
Target Start/End: Original strand, 5581976 - 5582241
Alignment:
| Q |
127 |
gagaatagtggtattacatgtgaaaatgcctaagatatcggcactagtgtggggttaattataaagttttctgaatgtttaaggtaactatgaattgttc |
226 |
Q |
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| T |
5581976 |
gagaatagttgtgttacatgtgaaaatgcctaagatatcggcactagtgtggggttaattataaagttttctgaatgtttaaggtaactatgaattgttc |
5582075 |
T |
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| Q |
227 |
aaagtttgtgtggtgttgacgtgagatttggtaatctttgtggatggaagagaacagagagaccaatttttcagttattgctacaccaagaaacaaagta |
326 |
Q |
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| T |
5582076 |
aaaggttgtgtggtgctgccgtgagatttggtaacctttgtggatggaagagaacagagagaccaatttttcagttattgctacaccaagaaacaaagta |
5582175 |
T |
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| Q |
327 |
acggtgtttcatttgcattaatgttggtaaaacatttctataaatatcagtttcatttgcattaat |
392 |
Q |
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| T |
5582176 |
acggtatttcatttgcattaatgttgttaaaatatttctataaatatcagtttcatttgcattaat |
5582241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 5581892 - 5581974
Alignment:
| Q |
17 |
caaagggagagaaaagtgtttgtgaaagtgatgaatgagaaatttagagagaaagcgagtttgtttatgaaatgaaaaagaggg |
100 |
Q |
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| T |
5581892 |
caaagggagagaaaattgtttgtgaaagtgatgaatgagaaactttgagagaaagagagtttatttatg-aaggaaaaagaggg |
5581974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 375
Target Start/End: Original strand, 5582225 - 5582268
Alignment:
| Q |
332 |
gtttcatttgcattaatgttggtaaaacatttctataaatatca |
375 |
Q |
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| T |
5582225 |
gtttcatttgcattaatgttattaaaatatttctataaatatca |
5582268 |
T |
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