View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_high_10 (Length: 421)
Name: NF20187_high_10
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 37758014 - 37757626
Alignment:
| Q |
16 |
atcagaatttctgggacacctctggattcaaaattgtgatgtctatgtccatgctagtcttggtggtattttcaaagcggtgaaaccattcctttgtcca |
115 |
Q |
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| T |
37758014 |
atcagaatttctgggacacctctggattcaaaattgtgatgtctatgtccatgctagtcttggtggtattttcaaagcggtgaaaccattcctttgtcca |
37757915 |
T |
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| Q |
116 |
caaggattcatgtatatagaggaacctaagaccttctcaagtttgttgtaggagtaaagagaagttttagaaggcatttcgtgctgtagaaacgcagttt |
215 |
Q |
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| T |
37757914 |
cgaggattcatgtatatagaggaacctaataccttctcaagtttgttgtaggagtaaagagaagttttagaaggcgtttcgtgctgtagaaacgcagttt |
37757815 |
T |
|
| Q |
216 |
tagagataatctagctttagcttatgcagtatgtagcagcatcaggatcacaacacaattttgatgtgttctatgtgaaactattctgtgtaggtgcgct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757814 |
tagagataatctagctttagcttatgcagtatgtagcagcatcaggatcacaacacaattttgatgtgttctatgtgaaactattctgtgtaggtgcgct |
37757715 |
T |
|
| Q |
316 |
tatatattttaggatgtttacagtttatcgcatcattaagctggtcaaatttttaatgtgaccataaagttactaccggcacttaccat |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37757714 |
tatatattttaggatgtttacagtttatcgcatcattaagctggtcaaatttttaatgtgaccataaagttactaccggcacttaccat |
37757626 |
T |
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