View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_high_12 (Length: 389)
Name: NF20187_high_12
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_high_12 |
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| [»] scaffold0874 (1 HSPs) |
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Alignment Details
Target: scaffold0874 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: scaffold0874
Description:
Target: scaffold0874; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Complemental strand, 4845 - 4477
Alignment:
| Q |
9 |
agcacagatacaaattactccaattctccaccatttttcagaatctttagcaggagctgcatcaatacgagctttcgatcaagaaggccgtttcatgagc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4845 |
agcacagatacaaattactccaattctccaccatttttcagaatctttagcaggagctgcatcaatacgagctttcgatcaagaaggccgtttcatgagc |
4746 |
T |
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| Q |
109 |
acaaatcttgttcttctggatggcttctcaaggccatggtttcataacgtgtctgcaatggaatggctttcttacagattgaacctgctttcaaattttg |
208 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4745 |
acaaatcttgttcttcttgatggcttctcaaggccatggtttcataacgtgtctgcaatggaatggctttcttacagattgaacttgctttcaaattttg |
4646 |
T |
|
| Q |
209 |
tttttgccttttcacttgtcttgctagtgagcctccctgaaggtttcataaatccaagtaagtacaaagctttattgagaaaatatcagtaatagacaat |
308 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4645 |
tttttgccttttcacttgtctttctagtgagcctccctgaaggtttcataaatccaagtaagtacaaatctttattgagaaaatatcagtaatagacaat |
4546 |
T |
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| Q |
309 |
aaaaccatgtgttttgcaaacatacgaaattattttcatataatactcctcacatgaattgaaaatgat |
377 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
4545 |
aaaaccatgtgttttgcaaacatacgaagttattttcatataattctcctcacatgaattgaaaatgat |
4477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 2303469 - 2303837
Alignment:
| Q |
9 |
agcacagatacaaattactccaattctccaccatttttcagaatctttagcaggagctgcatcaatacgagctttcgatcaagaaggccgtttcatgagc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2303469 |
agcacagatacaaattactccaattctccaccatttttcagaatctttagcaggagctgcatcaatacgagctttcgatcaagaaggccgtttcatgagc |
2303568 |
T |
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| Q |
109 |
acaaatcttgttcttctggatggcttctcaaggccatggtttcataacgtgtctgcaatggaatggctttcttacagattgaacctgctttcaaattttg |
208 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2303569 |
acaaatcttgttcttcttgatggcttctcaaggccatggtttcataacgtgtctgcaatggaatggctttcttacagattgaacttgctttcaaattttg |
2303668 |
T |
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| Q |
209 |
tttttgccttttcacttgtcttgctagtgagcctccctgaaggtttcataaatccaagtaagtacaaagctttattgagaaaatatcagtaatagacaat |
308 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2303669 |
tttttgccttttcacttgtctttctagtgagcctccctgaaggtttcataaatccaagtaagtacaaatctttattgagaaaatatcagtaatagacaat |
2303768 |
T |
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| Q |
309 |
aaaaccatgtgttttgcaaacatacgaaattattttcatataatactcctcacatgaattgaaaatgat |
377 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
2303769 |
aaaaccatgtgttttgcaaacatacgaagttattttcatataattctcctcacatgaattgaaaatgat |
2303837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 2328063 - 2328431
Alignment:
| Q |
9 |
agcacagatacaaattactccaattctccaccatttttcagaatctttagcaggagctgcatcaatacgagctttcgatcaagaaggccgtttcatgagc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2328063 |
agcacagatacaaattactccaattctccaccatttttcagaatctttagcaggagctgcatcaatacgagctttcgatcaagaaggccgcttcatgagc |
2328162 |
T |
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| Q |
109 |
acaaatcttgttcttctggatggcttctcaaggccatggtttcataacgtgtctgcaatggaatggctttcttacagattgaacctgctttcaaattttg |
208 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
2328163 |
acaaatcttgtccttctagatggcttctcaaggccatggtttcataacgtgtctgcaatggaatggctctcttacagattgaacttgctttcaaattttg |
2328262 |
T |
|
| Q |
209 |
tttttgccttttcacttgtcttgctagtgagcctccctgaaggtttcataaatccaagtaagtacaaagctttattgagaaaatatcagtaatagacaat |
308 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
2328263 |
tttttgccttttcacttgtcttactagtgagcctccctgaaggtttcataaatccaagtaagtacaaacctttattgagaaaatatcagaaatagacaat |
2328362 |
T |
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| Q |
309 |
aaaaccatgtgttttgcaaacatacgaaattattttcatataatactcctcacatgaattgaaaatgat |
377 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||| |||| |||||||||||||| |
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| T |
2328363 |
aaaaccatgtgttttgcaaacatacgaagttattttcatataatgctccacacaggaattgaaaatgat |
2328431 |
T |
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