View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_low_13 (Length: 366)
Name: NF20187_low_13
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 29 - 361
Target Start/End: Original strand, 4774933 - 4775265
Alignment:
| Q |
29 |
ggataaattttggggttaataccttaaataaacactaatttagcaatgactgattttcttaaaaggctnnnnnnntgatatattaacaaatcaggatcaa |
128 |
Q |
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| T |
4774933 |
ggataaattttggggttaatatcttaaataaacactaatttagcaatgactgattttcttaaaaggctaaaaaaatggtatattaacaaatcaggatcaa |
4775032 |
T |
|
| Q |
129 |
ctgtctcagcataggtgtacgaaaccaacccatcaagattacagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcaccaagac |
228 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4775033 |
ctgtttcagcataggtgtacgaaaccaacccatcaagattagagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcactaagac |
4775132 |
T |
|
| Q |
229 |
cctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaaca |
328 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775133 |
cctccttttaaataaattgtctctagcaggaacatgattcaaactcaaacgtaaagcaaaaattgagactttgagaagtactactttaagccaaagaaca |
4775232 |
T |
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| Q |
329 |
tgaggagtagagttctgaaacacctttgctact |
361 |
Q |
| |
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|||||||||||||||||||||||||||| |||| |
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| T |
4775233 |
tgaggagtagagttctgaaacacctttgttact |
4775265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 332
Target Start/End: Original strand, 29552984 - 29553092
Alignment:
| Q |
224 |
aagaccctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaa |
323 |
Q |
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||||||||||||||| ||||||||| | || ||||| | |||||| || |||||| ||||||||||| |||||||||||| | || | ||||||||||| |
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| T |
29552984 |
aagaccctccttttaaataaattgtttttagtaggaatacgattcagacccaatcgccaagcaaaaatagagactttgagaggaaccattttaagccaaa |
29553083 |
T |
|
| Q |
324 |
gaacatgag |
332 |
Q |
| |
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|||| |||| |
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| T |
29553084 |
gaacctgag |
29553092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 17173714 - 17173614
Alignment:
| Q |
227 |
accctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaa |
326 |
Q |
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|||||||||||| ||||||||||| | ||||| | ||||||||| ||| || |||||||| ||||| ||||||||| | || |||||||||||||||| |
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| T |
17173714 |
accctccttttaaataaattgtcttttgtaggaatacgattcaaacccaaacgccaagcaaatattgatactttgagatgaaccactttaagccaaagaa |
17173615 |
T |
|
| Q |
327 |
c |
327 |
Q |
| |
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| |
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| T |
17173614 |
c |
17173614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 38397807 - 38397707
Alignment:
| Q |
227 |
accctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaa |
326 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| | ||||||||| ||| || ||||| |||||||| ||||||||| || |||||||||||||||| |
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| T |
38397807 |
accctccttttaaataaattgtcttttgtaggaatacgattcaaacccaaacgccaagcgaaaattgatactttgagagaaaccactttaagccaaagaa |
38397708 |
T |
|
| Q |
327 |
c |
327 |
Q |
| |
|
| |
|
|
| T |
38397707 |
c |
38397707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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