View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_low_15 (Length: 349)
Name: NF20187_low_15
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 7265338 - 7265019
Alignment:
| Q |
17 |
aaatggaaacaaccaaccagattcgaatctagaaaaaacattttactttggtttgaaatcaatgtgcccaagatcaggtggtgacaacattatttctccc |
116 |
Q |
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| T |
7265338 |
aaatggaaacaaccaaccagattcgaatctagaaaaaacattttactttggtttgaaatcaatgtgcccaagatcaggtggtgacaacattatttctccc |
7265239 |
T |
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| Q |
117 |
ttggactttggttccccaagaatgtttgataatacctattacaaactcttacttaggggaaaaggattgcttaattcagatgaagtgcttctcacaggaa |
216 |
Q |
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| T |
7265238 |
ttggactttggttccccaagaatgtttgataatacctattacaaactcttacttaggggaaaaggattgcttaattcagatgaagtgcttctcacaggaa |
7265139 |
T |
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| Q |
217 |
gtgttaaggagactcgtgacctggtgaagaaatatgcacaagatgagagtctcttctttcaacaatttgccttgtctatgatcaagttggggaaccttcg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7265138 |
gtgttaaggagactcgtgacctggtgaagaaatatgaacaagatgagagtctcttctttcaacaatttgccttgtctatgatcaagttggggaaccttcg |
7265039 |
T |
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| Q |
317 |
tcctctcactggatttaatg |
336 |
Q |
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|||||||||||||||||||| |
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| T |
7265038 |
tcctctcactggatttaatg |
7265019 |
T |
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