View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_low_16 (Length: 342)
Name: NF20187_low_16
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 28050344 - 28050649
Alignment:
| Q |
19 |
attcatgcaattaaatacaagtctacaatcaaacagatttaagtaactagagattgtgatggaattacaaagcataattaactcatgaacttttattaat |
118 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28050344 |
attcatgaaattaaattcaagtctacaatcaaacagatttaagtaactagagactgtgatggaattacaaagcataattaactaatgaacttttattaat |
28050443 |
T |
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| Q |
119 |
atatgcnnnnnnncagttaagttcagcatgaagaataaagtgcttaatataacacttactgatccatgccattcagcacggtacactgtcccaaatgatc |
218 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28050444 |
atatgcaaaaaaacagttaggttcagcatgaagaataaagtgcttaatataacacttactgatccatgccattcagcacggtacactgtcccaaatgatc |
28050543 |
T |
|
| Q |
219 |
ctgcataaataaaagagcagtaacatttagagccatcatgtcatttatgctccttcaaaactgcaaagcatgagaaacggaaaatttaccagcaccaatg |
318 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28050544 |
ctgcataaataaaagagcagtaacatttagagcgatcatgtcatttatgctccttcaaaactgcaaagcatgagaaacggaaaatttaccagcaccaatg |
28050643 |
T |
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| Q |
319 |
cgttct |
324 |
Q |
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|||||| |
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| T |
28050644 |
cgttct |
28050649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 140 - 324
Target Start/End: Complemental strand, 13208019 - 13207835
Alignment:
| Q |
140 |
ttcagcatgaagaataaagtgcttaatataacacttactgatccatgccattcagcacggtacactgtcccaaatgatcctgcataaataaaagagcagt |
239 |
Q |
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|||||||||||||| |||||| || |||||||||||||| |||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| || |
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| T |
13208019 |
ttcagcatgaagaaaaaagtgattgatataacacttactaatccatgccattcagcacagtacattgtctcaaatgatcctgcataaataaaagaacaac |
13207920 |
T |
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| Q |
240 |
aacatttagagccatcatgtcatttatgctccttcaaaactgcaaagcatgagaaacggaaaatttaccagcaccaatgcgttct |
324 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13207919 |
aacaattagagccatcgcgtcatttatgctccttcaaaactgcaaagcatgagaaacagaaaatttaccagcaccaatgcgttct |
13207835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 140 - 324
Target Start/End: Original strand, 23479314 - 23479501
Alignment:
| Q |
140 |
ttcagcatgaagaataaagtgcttaatataacacttactgatccatgccattcagcacggtacactgtcccaaatgatcctgcataaataaaagagcagt |
239 |
Q |
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|||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23479314 |
ttcagcatgaagaaaaaagtgtttgatataacacttactgatccatgccattcagcacggtacactgtcccaaatgatcctgcataaataaaagaacagc |
23479413 |
T |
|
| Q |
240 |
aacatttagagccatcatgtcatttatg---ctccttcaaaactgcaaagcatgagaaacggaaaatttaccagcaccaatgcgttct |
324 |
Q |
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|| | ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23479414 |
aaaaattagagccatcgcgtcatttatgctcctccttcaaaactgcaaagcatgagaaacagaaaatttaccagcaccaatgcgttct |
23479501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 154 - 324
Target Start/End: Original strand, 7984566 - 7984736
Alignment:
| Q |
154 |
taaagtgcttaatataacacttactgatccatgccattcagcacggtacactgtcccaaatgatcctgcataaataaaagagcagtaacatttagagcca |
253 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| ||||||||| |
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| T |
7984566 |
taaagtgcttgatataacacttactgatccatgccattcagcacggtacactgtcccaaatgatcctgcataaataaaataacatcaacaattagagcca |
7984665 |
T |
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| Q |
254 |
tcatgtcatttatgctccttcaaaactgcaaagcatgagaaacggaaaatttaccagcaccaatgcgttct |
324 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
7984666 |
tcgcgtcatttatgctccttcaaaactgcaaagtatgagaaacagaaaatttaccagcaccaatgcgttct |
7984736 |
T |
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